Domain ID e4mlvA1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Porphobil_deam
UID: 001523459
Type: Automatic domain
Parent: e1pdaA4
Range: A:-1-39,A:61-100,A:198-218
Ligands: 29P ACY DPM
PDB: 4mlv
PDB Description: PORPHOBILINOGEN DEAMINASE
UniProt: Q8GCA8
Hsap BLAST neighbor: P08397
Species: Bacillus megaterium

Structure of domain e4mlvA1

Structural contacts of domain e4mlvA1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4mlvA3 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Periplasmic binding protein-like II Interaction Interface Pymol
e4mlvA1 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Periplasmic binding protein-like II Interaction Interface Pymol
e4mlvA1 A:-X,Y-1/2,-Z+1/2->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4mlvA2 A:X-1,Y,Z->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e4mlvA3 A:X-1/2,-Y-1/2,-Z->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4mlvA2 A:X-1/2,-Y-1/2,-Z->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol