Domain ID e4mq9B1

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  • A: a+b two layers
  • X: DCoH-like
  • H: RBP11-like subunits of RNA polymerase
  • T: RBP11-like subunits of RNA polymerase
  • F: RNA_pol_L
UID: 001397224
Type: Automatic domain
Parent: e1bdfA1
Range: B:7-49,B:173-236
PDB: 4mq9
PDB Description: DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA
UniProt: Q5SHR6
Species:

Structure of domain e4mq9B1

Domains in the same chain:

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e4mq9B1 B:7-49,B:173-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4mq9B2 B:50-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit

Domains in the same PDB:

e4mq9A1 A:6-49,A:173-231 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4mq9A2 A:50-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4mq9B1 B:7-49,B:173-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4mq9B2 B:50-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4mq9C6 C:1-141,C:331-456 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4mq9C7 C:142-330 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4mq9C2 C:457-591 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4mq9C1 C:592-662 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4mq9C9 C:664-700,C:827-999 cradle loop barrel RIFT-related double psi
e4mq9C8 C:699-832 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4mq9C4 C:999-1119 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4mq9D9 D:2-165,D:449-610 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4mq9D2 D:166-215,D:364-394 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4mq9D6 D:395-448 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4mq9D3 D:611-653,D:697-777 cradle loop barrel RIFT-related double psi
e4mq9D5 D:654-696 inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4mq9D4 D:778-948 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4mq9D1 D:949-1109 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4mq9D8 D:1110-1200 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4mq9D10 D:1201-1269,D:1331-1499 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4mq9D7 D:1270-1330 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4mq9E1 E:2-94 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e4mq9F1 F:78-255 Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors
e4mq9F3 F:256-310 HTH HTH tri-helical
e4mq9F2 F:311-418 HTH HTH tri-helical

Structural contacts of domain e4mq9B1 of H-group "RBP11-like subunits of RNA polymerase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4mq9A1 B:x,y,z->A:X,Y,Z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e4mq9D4 B:X,Y,Z->D:x,y,z first helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4mq9D5 B:X,Y,Z->D:x,y,z inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit Interaction Interface Pymol
e4mq9D3 B:X,Y,Z->D:x,y,z RIFT-related Interaction Interface Pymol
e4mq9C9 B:X,Y,Z->C:x,y,z RIFT-related Interaction Interface Pymol
e4mq9D8 B:x,y,z->D:-Y-1,X-Y-1,Z-1/3 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase Interaction Interface Pymol