Domain ID e4nplA1

Download files:
  • A: beta sandwiches
  • X: jelly-roll
  • H: Double-stranded beta-helix
  • T: Double-stranded beta-helix
  • F: 2OG-FeII_Oxy_2
UID: 001145645
Type: Automatic domain
Parent: e2fdiA1
Range: A:2-225
Ligands: AKG MN
PDB: 4npl
PDB Description: RNA demethylase ALKBH5
UniProt: Q08BA6
Hsap BLAST neighbor: Q6P6C2
Species: Danio rerio

Structure of domain e4nplA1

Structural contacts of domain e4nplA1 of H-group "Double-stranded beta-helix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4nplB1 A:-X,Y-1/2,-Z-1/2->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4nplA1 A:x,y,z->A:X-1/2,-Y+1/2,-Z Double-stranded beta-helix Interaction Interface Pymol
e4nplA1 A:X-1/2,-Y+1/2,-Z->A:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4nplB1 A:X,Y,Z->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4nplB1 A:X-1/2,-Y-1/2,-Z->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4nplB1 A:X-1,Y,Z->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol