| UID: | 001282855 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2fdiA1 |
| Range: | A:4-224 |
| Ligands: | MN SIN |
| PDB: | 4npm |
| PDB Description: | RNA demethylase ALKBH5 |
| UniProt: | Q08BA6 |
| Hsap BLAST neighbor: | Q6P6C2 |
| Species: | Danio rerio |
Structure of domain e4npmA1
Domains in the same chain:
| e4npmA1 | A:4-224 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
Domains in the same PDB:
| e4npmA1 | A:4-224 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
| e4npmB1 | B:9-223 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
Structural contacts of domain e4npmA1 of H-group "Double-stranded beta-helix":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4npmB1 | A:x,y,z->B:-X,Y-1/2,-Z-1/2 | Double-stranded beta-helix | Interaction Interface Pymol |
| e4npmA1 | A:x,y,z->A:X-1/2,-Y-1/2,-Z | Double-stranded beta-helix | Interaction Interface Pymol |
| e4npmA1 | A:X-1/2,-Y-1/2,-Z->A:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
| e4npmB1 | A:x,y,z->B:X-1/2,-Y+1/2,-Z | Double-stranded beta-helix | Interaction Interface Pymol |
| e4npmB1 | A:X,Y,Z->B:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
| e4npmB1 | A:x,y,z->B:X-1,Y,Z | Double-stranded beta-helix | Interaction Interface Pymol |
