| UID: | 001283299 |
|---|---|
| Type: | Automatic domain |
| Parent: | e4o9lA1 |
| Range: | B:1-94 |
| PDB: | 4nqk |
| PDB Description: | Probable ATP-dependent RNA helicase DDX58 |
| UniProt: | O95786 |
| Hsap BLAST neighbor: | O95786 |
| Species: | Homo sapiens |
Structure of domain e4nqkB1
Domains in the same chain:
| e4nqkB1 | B:1-94 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkB2 | B:95-188 | DEATH domain | DEATH domain | DEATH domain |
Domains in the same PDB:
| e4nqkA2 | A:1-94 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkA1 | A:95-188 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkB1 | B:1-94 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkB2 | B:95-188 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkC2 | C:1-94 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkC1 | C:95-188 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkD2 | D:1-94 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkD1 | D:95-188 | DEATH domain | DEATH domain | DEATH domain |
| e4nqkE1 | E:1-72 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4nqkF1 | F:1-73 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4nqkG1 | G:1-71 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4nqkH1 | H:1-75 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4nqkI1 | I:1-71 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4nqkJ1 | J:1-73 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
Structural contacts of domain e4nqkB1 of H-group "DEATH domain":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4nqkA2 | B:x,y,z->A:X,Y,Z | DEATH domain | Interaction Interface Pymol |
| e4nqkA1 | B:x,y,z->A:X,Y,Z | DEATH domain | Interaction Interface Pymol |
| e4nqkC2 | B:X,Y,Z->C:x,y,z | DEATH domain | Interaction Interface Pymol |
| e4nqkF1 | B:X,Y,Z->F:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4nqkE1 | B:X,Y,Z->E:x,y,z | Ubiquitin-related | Interaction Interface Pymol |
| e4nqkD1 | B:x,y,z->D:-X,Y-1/2,-Z-1 | DEATH domain | Interaction Interface Pymol |
