Domain ID e4nxnR1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 001293038
Type: Automatic domain
Parent: e2uubR1
Range: R:19-88
PDB: 4nxn
PDB Description: ribosomal protein S18
UniProt: Q5SLQ0
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e4nxnR1

Domains in the same chain:

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e4nxnR1 R:19-88 HTH HTH tri-helical

Domains in the same PDB:

e4nxnB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4nxnC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4nxnC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4nxnD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4nxnE2 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4nxnE1 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4nxnF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4nxnG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4nxnH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4nxnH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4nxnI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4nxnJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4nxnK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4nxnL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4nxnM1 M:2-119 HhH/H2TH H2TH H2TH
e4nxnN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4nxnO1 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4nxnP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4nxnQ1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4nxnR1 R:19-88 HTH HTH tri-helical
e4nxnS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4nxnT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4nxnR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4nxnF1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e4nxnK1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol