Domain ID e4octB1

Download files:
  • A: beta sandwiches
  • X: jelly-roll
  • H: Double-stranded beta-helix
  • T: Double-stranded beta-helix
  • F: 2OG-FeII_Oxy_2
UID: 001285758
Type: Automatic domain
Parent: e2fdiA1
Range: B:76-293
Ligands: AKG MN UNX
PDB: 4oct
PDB Description: RNA demethylase ALKBH5
UniProt: Q6P6C2
Hsap BLAST neighbor: Q6P6C2
Species: Homo sapiens

Structure of domain e4octB1

Structural contacts of domain e4octB1 of H-group "Double-stranded beta-helix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4octB1 B:x,y,z->B:-X+2,Y-1/2,-Z+1 Double-stranded beta-helix Interaction Interface Pymol
e4octB1 B:-X+2,Y-1/2,-Z+1->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4octA1 B:x,y,z->A:X,Y,Z Double-stranded beta-helix Interaction Interface Pymol
e4octA1 B:X-1,Y,Z-1->A:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4octA1 B:x,y,z->A:-X+1,Y-1/2,-Z+1 Double-stranded beta-helix Interaction Interface Pymol
e4octB1 B:x,y,z->B:-X+1,Y-1/2,-Z+1 Double-stranded beta-helix Interaction Interface Pymol
e4octB1 B:-X+1,Y-1/2,-Z+1->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4octA1 B:-X+1,Y-1/2,-Z+1->A:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4octA1 B:X-1,Y,Z->A:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e4octB1 B:x,y,z->B:X-1,Y,Z Double-stranded beta-helix Interaction Interface Pymol
e4octB1 B:X-1,Y,Z->B:x,y,z Double-stranded beta-helix Interaction Interface Pymol