ECOD: domain e4od2S3

Domain ID e4od2S3

A: few secondary structure elements
X: EGF-like
H: EGF-related
T: TNF receptor-like
F: TNFR_c6

UID:	001144497
Type:	Automatic domain
Parent:	e1extA1
Range:	S:98-125
PDB:	4od2
PDB Description:	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B
UniProt:	O14763
Hsap BLAST neighbor:	O14763
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e4od2S3

Domains in the same chain:

Download Pymol

e4od2S2	S:21-61	EGF-like	EGF-related	TNF receptor-like
e4od2S1	S:62-97	EGF-like	EGF-related	TNF receptor-like
e4od2S3	S:98-125	EGF-like	EGF-related	TNF receptor-like

Domains in the same PDB:

e4od2A2	A:1-108	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4od2A1	A:109-209	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4od2B2	B:1-121	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4od2B1	B:122-222	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4od2S2	S:21-61	EGF-like	EGF-related	TNF receptor-like
e4od2S1	S:62-97	EGF-like	EGF-related	TNF receptor-like
e4od2S3	S:98-125	EGF-like	EGF-related	TNF receptor-like

Structural contacts of domain e4od2S3 of H-group "EGF-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4od2A2	S:X,Y,Z->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4od2B2	S:X,Y,Z->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4od2S3	S:x,y,z->S:-Y+1,X-Y+1,Z	EGF-related	Interaction Interface Pymol
e4od2S3	S:-Y+1,X-Y+1,Z->S:x,y,z	EGF-related	Interaction Interface Pymol
e4od2A1	S:X,Y,Z-1->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4od2A1	S:X-Y+1,X+1,Z-1->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol