Domain ID e4ogqB1

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  • A: alpha bundles
  • X: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
  • H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
  • T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
  • F: Cytochrom_B_C
UID: 001291697
Type: Automatic domain
Parent: e1ppjC1
Range: B:2-160
Ligands: 2WA 2WM 3WM 7PH 8K6 CLA HEM OPC SQD UMQ
PDB: 4ogq
PDB Description: Cytochrome b6-f complex subunit 4
UniProt: Q93SX1
Hsap BLAST neighbor: P00156
Species: Nostoc sp. PCC 7120

Structure of domain e4ogqB1

Domains in the same chain:

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e4ogqB1 B:2-160 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Domains in the same PDB:

e4ogqA1 A:2-215 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e4ogqB1 B:2-160 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e4ogqC2 C:1-169,C:232-250 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e4ogqC1 C:170-231 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4ogqC3 C:251-289 Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
e4ogqD1 D:9-47 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e4ogqD3 D:48-92,D:132-179 ISP domain ISP domain ISP domain
e4ogqD2 D:93-131 Trm112p-like Trm112p-like Trm112p-like
e4ogqE1 E:1-31 PetL subunit of the cytochrome b6f complex PetL subunit of the cytochrome b6f complex PetL subunit of the cytochrome b6f complex
e4ogqF1 F:1-32 PetM subunit of the cytochrome b6f complex PetM subunit of the cytochrome b6f complex PetM subunit of the cytochrome b6f complex
e4ogqG1 G:1-37 PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex
e4ogqH1 H:1-29 PetN subunit of the cytochrome b6f complex PetN subunit of the cytochrome b6f complex PetN subunit of the cytochrome b6f complex

Structural contacts of domain e4ogqB1 of H-group "a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ogqA1 B:x,y,z->A:X,Y,Z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e4ogqC2 B:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4ogqC3 B:X,Y,Z->C:x,y,z Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor Interaction Interface Pymol
e4ogqG1 B:X,Y,Z->G:x,y,z PetG subunit of the cytochrome b6f complex Interaction Interface Pymol
e4ogqC2 B:X-Y,-Y+1,-Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4ogqD2 B:X,X-Y+1,-Z+1/6->D:x,y,z Trm112p-like Interaction Interface Pymol
e4ogqD3 B:X,X-Y+1,-Z+1/6->D:x,y,z ISP domain Interaction Interface Pymol
e4ogqH1 B:X,Y,Z->H:x,y,z PetN subunit of the cytochrome b6f complex Interaction Interface Pymol
e4ogqD1 B:X,Y,Z->D:x,y,z iron-sulfur subunit (ISP) transmembrane anchor Interaction Interface Pymol
e4ogqA1 B:x,y,z->A:X,X-Y+1,-Z+1/6 Transmembrane heme-binding four-helical bundle Interaction Interface Pymol