Domain ID e4ox9R1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 001285126
Type: Automatic domain
Parent: e2uubR1
Range: R:16-88
PDB: 4ox9
PDB Description: 30S ribosomal protein S18
UniProt: Q5SLQ0
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e4ox9R1

Domains in the same chain:

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e4ox9R1 R:16-88 HTH HTH tri-helical

Domains in the same PDB:

e4ox9B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4ox9C1 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4ox9C2 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4ox9D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4ox9E2 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4ox9E1 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ox9F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4ox9G1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4ox9H1 H:1-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4ox9H2 H:77-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4ox9I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ox9J1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4ox9K1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ox9L1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ox9M1 M:2-126 HhH/H2TH H2TH H2TH
e4ox9N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ox9O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4ox9P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4ox9Q1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ox9R1 R:16-88 HTH HTH tri-helical
e4ox9S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4ox9T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4ox9Y1 Y:1-219 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases

Structural contacts of domain e4ox9R1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ox9F1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e4ox9K1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol