Domain ID e4pe5B3

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Lig_chan-Glu_bd
UID: 001518868
Type: Manual and representative domain
Range: B:395-528,B:762-802
Ligands: GLU GLY
PDB: 4pe5
PDB Description: Glutamate receptor ionotropic, NMDA 2B
UniProt: Q00960
Hsap BLAST neighbor: Q13224
Species: Rattus norvegicus

Structure of domain e4pe5B3

Domains in the same chain:

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e4pe5B1 B:30-147,B:286-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B2 B:148-285 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B3 B:395-528,B:762-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B5 B:529-539,B:660-761 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B4 B:551-569,B:602-659,B:821-841 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Domains in the same PDB:

e4pe5A3 A:25-142,A:273-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5A4 A:143-272 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5A6 A:395-535,A:757-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5A5 A:536-548,A:659-756 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5A2 A:549-582,A:605-658,A:805-830 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4pe5B1 B:30-147,B:286-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B2 B:148-285 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5B3 B:395-528,B:762-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B5 B:529-539,B:660-761 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5B4 B:551-569,B:602-659,B:821-841 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4pe5C1 C:25-142,C:273-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5C2 C:143-272 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5C3 C:395-535,C:757-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5C5 C:536-548,C:659-756 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5C4 C:554-658,C:805-833 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4pe5D3 D:32-147,D:286-394 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5D1 D:148-285 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4pe5D4 D:395-528,D:762-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5D5 D:529-539,D:660-761 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pe5D2 D:540-567,D:602-659,D:821-838 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Structural contacts of domain e4pe5B3 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4pe5A5 B:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4pe5C5 B:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4pe5C3 B:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4pe5C2 B:x,y,z->C:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol