Domain ID e4ptfA3

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: POL2_thumb
UID: 001288929
Type: Automatic domain
Parent: e4m8oA6
Range: A:986-1185
Ligands: NA
PDB: 4ptf
PDB Description: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
UniProt: P21951
Hsap BLAST neighbor: Q07864
Species: Saccharomyces cerevisiae

Structure of domain e4ptfA3

Domains in the same chain:

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e4ptfA5 A:30-90,A:110-138,A:250-281 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ptfA4 A:137-249 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ptfA2 A:282-511 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ptfA1 A:512-770,A:843-985 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ptfA6 A:767-842 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ptfA3 A:986-1185 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4ptfA5 A:30-90,A:110-138,A:250-281 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ptfA4 A:137-249 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ptfA2 A:282-511 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ptfA1 A:512-770,A:843-985 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ptfA6 A:767-842 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ptfA3 A:986-1185 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4ptfA3 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ptfA3 A:x,y,z->A:-X+1/2,Y-1/2,-Z+1 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ptfA3 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol