Domain ID e4ptfA5

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Unmapped domains
UID: 001288931
Type: Automatic domain
Parent: e4m8oA1
Range: A:30-90,A:110-138,A:250-281
PDB: 4ptf
PDB Description: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
UniProt: P21951
Hsap BLAST neighbor: Q07864
Species: Saccharomyces cerevisiae

Structure of domain e4ptfA5

Domains in the same chain:

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e4ptfA5 A:30-90,A:110-138,A:250-281 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ptfA4 A:137-249 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ptfA2 A:282-511 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ptfA1 A:512-770,A:843-985 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ptfA6 A:767-842 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ptfA3 A:986-1185 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4ptfA5 A:30-90,A:110-138,A:250-281 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ptfA4 A:137-249 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4ptfA2 A:282-511 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ptfA1 A:512-770,A:843-985 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ptfA6 A:767-842 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ptfA3 A:986-1185 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4ptfA5 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ptfA6 A:x,y,z->A:-X,Y,-Z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ptfA1 A:x,y,z->A:-X,Y,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ptfA1 A:-X,Y,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ptfA6 A:-X,Y,-Z->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ptfA4 A:x,y,z->A:X,Y-1,Z Family B DNA polymerase insertion domain Interaction Interface Pymol