ECOD: domain e4q84A1

Domain ID e4q84A1

A: alpha superhelices
X: Repetitive alpha hairpins
H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
F: YcaO_C

UID:	001325032
Type:	Automatic domain
Parent:	e4q85B4
Range:	A:407-581
Ligands:	HG
PDB:	4q84
PDB Description:	Ribosomal protein S12 methylthiotransferase accessory factor YcaO
UniProt:	P75838
Species:

Domains in the same chain:

Download Pymol

e4q84A4	A:11-103	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84A3	A:104-213,A:347-406	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84A2	A:214-346	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84A1	A:407-581	Repetitive alpha hairpins	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain

Domains in the same PDB:

e4q84A4	A:11-103	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84A3	A:104-213,A:347-406	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84A2	A:214-346	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84A1	A:407-581	Repetitive alpha hairpins	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q84B4	B:12-103	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84B3	B:104-213,B:347-406	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84B2	B:214-346	dsRBD-like	Heterocyclase TruD C-terminal domain	Heterocyclase TruD C-terminal domain
e4q84B1	B:407-584	Repetitive alpha hairpins	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain

Structural contacts of domain e4q84A1 of H-group "Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4q84B2	A:X,Y,Z->B:x,y,z	Heterocyclase TruD C-terminal domain	Interaction Interface Pymol
e4q84B4	A:x,y,z->B:-X+1/2,-Y,Z-1/2	Heterocyclase TruD C-terminal domain	Interaction Interface Pymol
e4q84B1	A:x,y,z->B:-X+1,Y-1/2,-Z+1/2	Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	Interaction Interface Pymol
e4q84A2	A:x,y,z->A:-X+1,Y-1/2,-Z+1/2	Heterocyclase TruD C-terminal domain	Interaction Interface Pymol