Domain ID e4qd0L1

Download files:
  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001324088
Type: Automatic domain
Parent: e2uubL1
Range: L:5-126
Ligands: MG
PDB: 4qd0
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4qd0L1

Domains in the same chain:

Download Pymol

e4qd0L1 L:5-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4qd0C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4qd0C1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4qd0E2 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4qd0E1 E:73-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4qd0F1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4qd0G1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4qd0H1 H:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4qd0H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4qd0J1 J:5-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4qd0K1 K:13-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4qd0L1 L:5-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4qd0N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4qd0O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4qd0P1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4qd0R1 R:20-87 HTH HTH tri-helical
e4qd0T1 T:8-103 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4qd0L1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4qd0H2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol