ECOD: domain e4u1yB3

Domain ID e4u1yB3

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: Lig_chan-Glu_bd

UID:	001656988
Type:	Automatic domain
Parent:	e1mqiA3
Range:	B:392-497,B:731-774
Ligands:	FWD FWF
PDB:	4u1y
PDB Description:	Glutamate receptor 2
UniProt:	P19491
Hsap BLAST neighbor:	P42262
Species:	Rattus norvegicus

Domain
In chain context
In PDB context

Structure of domain e4u1yB3

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e4u1yA3	A:8-112,A:246-391	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yA1	A:113-163,A:186-245	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yA2	A:392-497,A:725-767	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yA4	A:507-544,A:594-624,A:768-814	Voltage-gated ion channels	Voltage-gated ion channels	Voltage-gated ion channels
e4u1yA5	A:629-730	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yB1	B:10-112,B:246-391	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yB4	B:113-245	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yB3	B:392-497,B:731-774	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yB2	B:498-506,B:631-730	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yB5	B:507-546,B:594-630,B:785-816	Voltage-gated ion channels	Voltage-gated ion channels	Voltage-gated ion channels
e4u1yC2	C:11-112,C:246-391	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yC1	C:113-245	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yC3	C:392-497,C:731-773	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yC4	C:498-506,C:631-730	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yC5	C:507-544,C:593-630,C:785-814	Voltage-gated ion channels	Voltage-gated ion channels	Voltage-gated ion channels
e4u1yD4	D:11-112,D:246-391	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yD5	D:113-245	Flavodoxin-like	Class I glutamine amidotransferase-like	Periplasmic binding protein-like I
e4u1yD1	D:392-497,D:731-775	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yD3	D:498-506,D:631-730	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4u1yD2	D:507-543,D:596-630,D:785-817	Voltage-gated ion channels	Voltage-gated ion channels	Voltage-gated ion channels

Structural contacts of domain e4u1yB3 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4u1yA5	B:x,y,z->A:X,Y,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4u1yC3	B:X,Y,Z->C:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4u1yD1	B:-X+1,Y-1/2,-Z+1/2->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4u1yA1	B:-X+1,Y-1/2,-Z+1/2->A:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e4u1yA3	B:-X+1,Y-1/2,-Z+1/2->A:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol