Domain ID e4u1yD1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Lig_chan-Glu_bd
UID: 001656991
Type: Automatic domain
Parent: e1mqiA3
Range: D:392-497,D:731-775
Ligands: FWD FWF
PDB: 4u1y
PDB Description: Glutamate receptor 2
UniProt: P19491
Hsap BLAST neighbor: P42262
Species: Rattus norvegicus

Structure of domain e4u1yD1

Domains in the same chain:

Download Pymol

e4u1yD4 D:11-112,D:246-391 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yD5 D:113-245 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yD1 D:392-497,D:731-775 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yD3 D:498-506,D:631-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yD2 D:507-543,D:596-630,D:785-817 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Domains in the same PDB:

e4u1yA3 A:8-112,A:246-391 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yA1 A:113-163,A:186-245 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yA2 A:392-497,A:725-767 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yA4 A:507-544,A:594-624,A:768-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u1yA5 A:629-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yB1 B:10-112,B:246-391 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yB4 B:113-245 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yB3 B:392-497,B:731-774 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yB2 B:498-506,B:631-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yB5 B:507-546,B:594-630,B:785-816 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u1yC2 C:11-112,C:246-391 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yC1 C:113-245 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yC3 C:392-497,C:731-773 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yC4 C:498-506,C:631-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yC5 C:507-544,C:593-630,C:785-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u1yD4 D:11-112,D:246-391 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yD5 D:113-245 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u1yD1 D:392-497,D:731-775 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yD3 D:498-506,D:631-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u1yD2 D:507-543,D:596-630,D:785-817 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Structural contacts of domain e4u1yD1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4u1yC4 D:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4u1yA1 D:x,y,z->A:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e4u1yA2 D:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4u1yB4 D:x,y,z->B:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e4u1yB3 D:x,y,z->B:-X+1,Y-1/2,-Z+1/2 Periplasmic binding protein-like II Interaction Interface Pymol