Domain ID e4uq5E1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4e,RS4NT
UID: 001318069
Type: Automatic domain
Parent: e4d5lE1
Range: E:2-116
PDB: 4uq5
PDB Description:
Hsap BLAST neighbor: P22090
Species:

Structure of domain e4uq5E1

Domains in the same chain:

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e4uq5E1 E:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4uq5E2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4uq5E3 E:176-258 SH3 SH3 SH3

Domains in the same PDB:

e4uq5a1 a:2-97 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4uq5b1 b:4-83 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4uq5B2 B:21-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4uq5B1 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4uq5c1 c:8-69 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4uq5C1 C:202-278 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4uq5d1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4uq5D1 D:2-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4uq5D2 D:92-213 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4uq5E1 E:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4uq5E2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4uq5E3 E:176-258 SH3 SH3 SH3
e4uq5f1 f:91-151 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4uq5F1 F:17-204 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4uq5g1 g:2-315 beta-propeller-like beta-propeller 7-bladed
e4uq5G1 G:1-232 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4uq5H1 H:4-107 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4uq5H2 H:108-194 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4uq5I1 I:2-208 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4uq5K1 K:2-95 HTH HTH winged
e4uq5M1 M:11-130 Bacillus chorismate mutase-like L30e-like L30e-like
e4uq5N2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4uq5N1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4uq5O1 O:15-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4uq5R1 R:2-122 HTH HTH FF domain
e4uq5T1 T:2-144 HTH HTH winged
e4uq5U1 U:18-118 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4uq5V1 V:1-83 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e4uq5W2 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4uq5W1 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4uq5X1 X:7-140 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4uq5Y1 Y:4-125 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4uq5Z1 Z:40-115 HTH HTH winged

Structural contacts of domain e4uq5E1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4uq5Y1 E:x,y,z->Y:X,Y,Z Ribosomal proteins S24e, L23 and L15e Interaction Interface Pymol