Domain ID e4v1nI2

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: RNA_POL_M_15KD
UID: 001497707
Type: Automatic domain
Parent: e1twfI1
Range: I:2-49
Ligands: ZN
PDB: 4v1n
PDB Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9
UniProt: P27999
Hsap BLAST neighbor: P36954
Species: Saccharomyces cerevisiae

Structure of domain e4v1nI2

Domains in the same chain:

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e4v1nI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1nI1 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e4v1nA2 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4v1nA4 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e4v1nA5 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4v1nA8 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4v1nA7 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4v1nA9 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4v1nA3 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4v1nA1 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v1nA6 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v1nB2 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v1nB5 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4v1nB4 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4v1nB1 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4v1nB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e4v1nB7 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4v1nB3 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v1nC2 C:3-37,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4v1nC1 C:38-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4v1nD1 D:3-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4v1nE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e4v1nE1 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4v1nF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4v1nG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4v1nG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4v1nH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4v1nI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1nI1 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1nJ1 J:1-65 HTH RPB10 RPB10
e4v1nK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4v1nL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1nM3 M:22-79 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1nM1 M:80-213,M:233-236 HTH HTH Cyclin-like
e4v1nM2 M:237-343 HTH HTH Cyclin-like
e4v1nO1 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e4v1nO2 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e4v1nQ1 Q:92-143,Q:343-412 triple barrel triple barrel Rap30/74 interaction domains-like
e4v1nR1 R:54-227 triple barrel triple barrel Rap30/74 interaction domains-like