Domain ID e4v1oH1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: RNA_pol_Rpb8
UID: 001497733
Type: Automatic domain
Parent: e1twfH1
Range: H:2-146
PDB: 4v1o
PDB Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3
UniProt: P20436
Hsap BLAST neighbor: P52434
Species: Saccharomyces cerevisiae

Structure of domain e4v1oH1

Domains in the same chain:

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e4v1oH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4v1oA1 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4v1oA4 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e4v1oA5 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4v1oA6 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4v1oA3 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4v1oA8 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4v1oA2 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4v1oA9 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v1oA7 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4v1oB3 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v1oB1 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4v1oB2 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4v1oB6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4v1oB4 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e4v1oB7 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4v1oB5 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4v1oC1 C:3-37,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4v1oC2 C:38-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4v1oD1 D:3-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4v1oE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e4v1oE1 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4v1oF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4v1oG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4v1oG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4v1oH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4v1oI1 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1oI2 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1oJ1 J:1-65 HTH RPB10 RPB10
e4v1oK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4v1oL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1oM3 M:22-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4v1oM1 M:80-213,M:233-236 HTH HTH Cyclin-like
e4v1oM2 M:237-343 HTH HTH Cyclin-like
e4v1oO2 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e4v1oO1 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e4v1oQ1 Q:92-143,Q:343-412 triple barrel triple barrel Rap30/74 interaction domains-like
e4v1oR1 R:54-227 triple barrel triple barrel Rap30/74 interaction domains-like
e4v1oS1 S:7-52,S:100-203 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6
e4v1oU1 U:31-171,U:195-210 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8
e4v1oV1 V:4-111 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11
e4v1oW1 W:199-684 Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 17
e4v1oX1 X:2-93,X:159-301 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e4v1oY1 Y:2-209 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e4v1oZ1 Z:2-121 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22