ECOD: domain e4xlrJ2

Domain ID e4xlrJ2

A: a+b complex topology
X: central helical domain in RNA-polymerase beta-prime subunit
H: central helical domain in RNA-polymerase beta-prime subunit
T: central helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5

UID:	001687548
Type:	Automatic domain
Parent:	e1twfA12
Range:	J:1201-1269,J:1331-1505
Ligands:	ZN
PDB:	4xlr
PDB Description:	DNA-directed RNA polymerase subunit beta'
UniProt:	Q9KWU6
Hsap BLAST neighbor:	O14802
Species:	Thermus aquaticus

Domains in the same chain:

Download Pymol

e4xlrJ7	J:2-165,J:449-610	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4xlrJ4	J:166-216,J:364-394	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrJ6	J:395-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrJ10	J:611-653,J:697-777	cradle loop barrel	RIFT-related	double psi
e4xlrJ3	J:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4xlrJ8	J:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4xlrJ1	J:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4xlrJ5	J:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4xlrJ2	J:1201-1269,J:1331-1505	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4xlrJ9	J:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Domains in the same PDB:

e4xlrA1	A:7-49,A:173-233	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4xlrA2	A:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4xlrB1	B:7-49,B:173-233	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4xlrB2	B:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4xlrC1	C:2-141,C:331-457	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4xlrC4	C:142-330	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4xlrC3	C:458-591	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4xlrC7	C:592-662	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrC5	C:663-700,C:827-999	cradle loop barrel	RIFT-related	double psi
e4xlrC2	C:699-832	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrC6	C:999-1118	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4xlrD10	D:2-165,D:448-621	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4xlrD5	D:166-208,D:389-395	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrD6	D:209-216,D:341-388	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrD1	D:217-340	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Duplicated hybrid motif
e4xlrD2	D:396-447	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrD3	D:622-653,D:697-777	cradle loop barrel	RIFT-related	double psi
e4xlrD4	D:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4xlrD7	D:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4xlrD9	D:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4xlrD8	D:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4xlrD12	D:1201-1269,D:1331-1505	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4xlrD11	D:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrE1	E:2-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e4xlrF2	F:94-272	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e4xlrF1	F:273-332	HTH	HTH	tri-helical
e4xlrF3	F:333-438	HTH	HTH	tri-helical
e4xlrG2	G:7-49,G:173-233	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4xlrG1	G:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4xlrH1	H:7-49,H:173-233	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4xlrH2	H:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4xlrI4	I:2-141,I:331-456	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4xlrI7	I:142-330	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4xlrI2	I:457-591	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4xlrI6	I:592-662	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrI1	I:663-700,I:827-999	cradle loop barrel	RIFT-related	double psi
e4xlrI5	I:699-832	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrI3	I:999-1118	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4xlrJ7	J:2-165,J:449-610	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4xlrJ4	J:166-216,J:364-394	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrJ6	J:395-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrJ10	J:611-653,J:697-777	cradle loop barrel	RIFT-related	double psi
e4xlrJ3	J:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e4xlrJ8	J:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4xlrJ1	J:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4xlrJ5	J:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4xlrJ2	J:1201-1269,J:1331-1505	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4xlrJ9	J:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4xlrK1	K:2-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e4xlrL1	L:94-272	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e4xlrL2	L:273-332	HTH	HTH	tri-helical
e4xlrL3	L:333-438	HTH	HTH	tri-helical
e4xlrM1	M:3-63	SH3	SH3	SH3
e4xlrM2	M:64-160	HTH	HTH	tri-helical
e4xlrN2	N:3-63	SH3	SH3	SH3
e4xlrN1	N:64-160	HTH	HTH	tri-helical