ECOD: domain e5c4aI2

Domain ID e5c4aI2

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: TFIIS_C

UID:	001681248
Type:	Automatic domain
Parent:	e1twfI2
Range:	I:50-115
Ligands:	ZN
PDB:	5c4a
PDB Description:	DNA-directed RNA polymerase II subunit RPB9
UniProt:	P27999
Hsap BLAST neighbor:	P36954
Species:

Domains in the same chain:

Download Pymol

e5c4aI1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5c4aI2	I:50-115	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

e5c4aA2	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5c4aA5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e5c4aA4	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5c4aA9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5c4aA8	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5c4aA6	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5c4aA1	A:1060-1102,A:1301-1454	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5c4aA3	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5c4aA7	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5c4aB3	B:20-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5c4aB5	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5c4aB4	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5c4aB6	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5c4aB1	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e5c4aB2	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5c4aB7	B:1098-1223	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5c4aC1	C:4-41,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5c4aC2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5c4aD1	D:14-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5c4aE2	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5c4aE1	E:143-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5c4aF1	F:69-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5c4aG2	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5c4aG1	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5c4aH1	H:1-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5c4aI1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5c4aI2	I:50-115	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5c4aJ1	J:1-66	HTH	RPB10	RPB10
e5c4aK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5c4aL1	L:27-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related