ECOD: domain e5c4jI2

Domain ID e5c4jI2

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: RNA_POL_M_15KD

UID:	001681275
Type:	Automatic domain
Parent:	e1twfI1
Range:	I:2-49
Ligands:	ZN
PDB:	5c4j
PDB Description:	DNA-directed RNA polymerase II subunit RPB9
UniProt:	P27999
Hsap BLAST neighbor:	P36954
Species:

Domains in the same chain:

Download Pymol

e5c4jI2	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5c4jI1	I:50-115	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

e5c4jA9	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5c4jA1	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e5c4jA2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5c4jA5	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5c4jA8	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5c4jA3	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5c4jA7	A:1060-1102,A:1301-1453	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5c4jA6	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5c4jA4	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5c4jB3	B:20-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5c4jB1	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5c4jB6	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5c4jB5	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5c4jB4	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e5c4jB7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5c4jB2	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5c4jC1	C:4-41,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5c4jC2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5c4jE1	E:4-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5c4jE2	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5c4jF1	F:69-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5c4jH1	H:3-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5c4jI2	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5c4jI1	I:50-115	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5c4jJ1	J:1-66	HTH	RPB10	RPB10
e5c4jK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5c4jL1	L:28-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related