Domain ID e5dgfq01

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L40e
UID: 001934195
Type: Automatic domain
Parent: e2ayjA1
Range: q0:77-128
Ligands: ZN
PDB: 5dgf
PDB Description: Ubiquitin-60S ribosomal protein L40
UniProt: P0CH08
Hsap BLAST neighbor: P62987
Species:

Structure of domain e5dgfq01

Domains in the same chain:

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e5dgfq01 q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e5dgfc01 c0:1-98 HTH HTH winged
e5dgfC01 C0:1-96 HTH HTH winged
e5dgfc11 c1:2-147 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfC11 C1:2-156 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfc21 c2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgfC21 C2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgfc32 c3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5dgfc31 c3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5dgfC31 C3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5dgfC32 C3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5dgfc41 c4:10-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgfC41 C4:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgfc51 c5:4-138 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5dgfC51 C5:8-131 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5dgfc61 c6:2-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgfC61 C6:3-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgfc71 c7:2-122 HTH HTH FF domain
e5dgfC71 C7:2-126 HTH HTH FF domain
e5dgfc81 c8:2-146 HhH/H2TH H2TH H2TH
e5dgfC81 C8:2-146 HhH/H2TH H2TH H2TH
e5dgfc91 c9:2-144 HTH HTH winged
e5dgfC91 C9:2-144 HTH HTH winged
e5dgfd01 d0:12-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5dgfD01 D0:15-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5dgfd11 d1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5dgfD11 D1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5dgfd22 d2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5dgfd21 d2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5dgfD22 D2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5dgfD21 D2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5dgfd31 d3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfD31 D3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfd41 d4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgfD41 D4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgfd51 d5:37-105 HTH HTH winged
e5dgfD51 D5:36-105 HTH HTH winged
e5dgfd61 d6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgfD61 D6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgfd71 d7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfD71 D7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfd81 d8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfD81 D8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfd91 d9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgfD91 D9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgfe01 e0:2-63 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5dgfE01 E0:2-61 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5dgfe11 e1:77-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfE11 E1:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgff2 f:10-84 SH3 SH3 SH3
e5dgff1 f:85-157 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfl22 l2:99-253 SH3 SH3 SH3
e5dgfl21 l2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfL21 L2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfL22 L2:99-253 SH3 SH3 SH3
e5dgfl31 l3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5dgfL31 L3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5dgfl42 l4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5dgfl41 l4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5dgfL41 L4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5dgfL42 L4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5dgfl51 l5:4-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgfL51 L5:2-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgfl61 l6:2-176 SH3 SH3 SH3
e5dgfL61 L6:2-109,L6:129-176 SH3 SH3 SH3
e5dgfl71 l7:22-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5dgfL71 L7:23-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5dgfl81 l8:24-254 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgfL81 L8:24-256 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgfl92 l9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgfl91 l9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgfL92 L9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgfL91 L9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgfm01 m0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5dgfM01 M0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5dgfm11 m1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5dgfM11 M1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5dgfm31 m3:2-195 RPL13 RPL13 RPL13
e5dgfM31 M3:2-194 RPL13 RPL13 RPL13
e5dgfm41 m4:2-138 SH3 SH3 SH3
e5dgfM41 M4:3-138 SH3 SH3 SH3
e5dgfm51 m5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgfM51 M5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgfm61 m6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5dgfM61 M6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5dgfm71 m7:2-156 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5dgfM71 M7:2-184 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5dgfm81 m8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgfM81 M8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgfm91 m9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5dgfm92 m9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5dgfM92 M9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5dgfM91 M9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5dgfn02 n0:1-69 GP2-like RplX-like RplX-like
e5dgfn01 n0:70-172 GP2-like RplX-like RplX-like
e5dgfN01 N0:70-172 GP2-like RplX-like RplX-like
e5dgfN02 N0:1-69 GP2-like RplX-like RplX-like
e5dgfn11 n1:2-160 SH3 SH3 SH3
e5dgfN11 N1:2-160 SH3 SH3 SH3
e5dgfn21 n2:11-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5dgfN21 N2:9-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5dgfn31 n3:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgfN31 N3:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgfn41 n4:1-135 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgfN41 N4:1-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgfn51 n5:23-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgfN51 N5:22-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgfn61 n6:2-127 SH3 SH3 SH3
e5dgfN61 N6:2-127 SH3 SH3 SH3
e5dgfn71 n7:2-136 SH3 SH3 SH3
e5dgfN71 N7:2-136 SH3 SH3 SH3
e5dgfn81 n8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgfN81 N8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgfn91 n9:2-59 RPL29 RPL29 RPL29
e5dgfN91 N9:2-59 RPL29 RPL29 RPL29
e5dgfo01 o0:6-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgfO01 O0:9-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgfo11 o1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5dgfO11 O1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5dgfo21 o2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5dgfO21 O2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5dgfo31 o3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5dgfO31 O3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5dgfo41 o4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5dgfO41 O4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5dgfo51 o5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5dgfO51 O5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5dgfo61 o6:2-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5dgfO61 O6:2-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5dgfo71 o7:2-88 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfO71 O7:2-88 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfo81 o8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5dgfO81 O8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5dgfo91 o9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5dgfO91 O9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5dgfp01 p0:3-107,p0:184-198 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e5dgfq01 q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfQ01 Q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfq11 q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5dgfQ11 Q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5dgfq21 q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfQ21 Q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfq31 q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfQ31 Q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgfs01 s0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5dgfS01 S0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5dgfs12 s1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5dgfs11 s1:114-235 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5dgfS11 S1:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5dgfS12 S1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5dgfs21 s2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5dgfs22 s2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgfs23 s2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5dgfS22 S2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5dgfS23 S2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgfS21 S2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5dgfs31 s3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5dgfs32 s3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5dgfS31 S3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5dgfS32 S3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5dgfs42 s4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgfs43 s4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfs41 s4:176-261 SH3 SH3 SH3
e5dgfS43 S4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgfS41 S4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgfS42 S4:176-261 SH3 SH3 SH3
e5dgfs51 s5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5dgfS51 S5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5dgfs61 s6:1-218 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5dgfS61 S6:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5dgfs72 s7:2-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgfs71 s7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgfS72 S7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgfS71 S7:4-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgfs81 s8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgfS81 S8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgfs91 s9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgfS91 S9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgfSM1 SM:9-141 Suppressor protein STM1 Suppressor protein STM1 Suppressor protein STM1
e5dgfsR1 sR:2-319 beta-propeller-like beta-propeller 7-bladed
e5dgfSR1 SR:2-319 beta-propeller-like beta-propeller 7-bladed