Domain ID e5dgvO81

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  • A: a+b two layers
  • X: SRP9/14-like
  • H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related
  • T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related
  • F: Ribosomal_L38e
UID: 001934364
Type: Automatic domain
Parent: e4v8pAP1
Range: O8:2-78
PDB: 5dgv
PDB Description: 60S ribosomal protein L38
UniProt: P49167
Hsap BLAST neighbor: P63173
Species:

Structure of domain e5dgvO81

Domains in the same chain:

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e5dgvO81 O8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related

Domains in the same PDB:

e5dgvc01 c0:1-98 HTH HTH winged
e5dgvC01 C0:1-96 HTH HTH winged
e5dgvc11 c1:2-147 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvC11 C1:2-156 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvc21 c2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgvC21 C2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgvc32 c3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5dgvc31 c3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5dgvC31 C3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5dgvC32 C3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5dgvc41 c4:10-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgvC41 C4:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgvc51 c5:4-138 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5dgvC51 C5:8-131 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5dgvc61 c6:2-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgvC61 C6:3-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgvc71 c7:2-122 HTH HTH FF domain
e5dgvC71 C7:2-126 HTH HTH FF domain
e5dgvc81 c8:2-146 HhH/H2TH H2TH H2TH
e5dgvC81 C8:2-146 HhH/H2TH H2TH H2TH
e5dgvc91 c9:2-144 HTH HTH winged
e5dgvC91 C9:2-144 HTH HTH winged
e5dgvd01 d0:12-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5dgvD01 D0:15-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5dgvd11 d1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5dgvD11 D1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5dgvd22 d2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5dgvd21 d2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5dgvD21 D2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5dgvD22 D2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5dgvd31 d3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvD31 D3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvd41 d4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgvD41 D4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgvd51 d5:37-105 HTH HTH winged
e5dgvD51 D5:36-105 HTH HTH winged
e5dgvd61 d6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgvD61 D6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgvd71 d7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvD71 D7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvd81 d8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvD81 D8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvd91 d9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgvD91 D9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgve01 e0:2-63 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5dgvE01 E0:2-61 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5dgve11 e1:77-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvE11 E1:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvl21 l2:99-253 SH3 SH3 SH3
e5dgvl22 l2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvL22 L2:99-253 SH3 SH3 SH3
e5dgvL21 L2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvl31 l3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5dgvL31 L3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5dgvl41 l4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5dgvl42 l4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5dgvL41 L4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5dgvL42 L4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5dgvl51 l5:4-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgvL51 L5:2-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5dgvl61 l6:2-176 SH3 SH3 SH3
e5dgvL61 L6:2-109,L6:129-176 SH3 SH3 SH3
e5dgvl71 l7:22-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5dgvL71 L7:23-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5dgvl81 l8:24-254 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgvL81 L8:24-256 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgvl92 l9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgvl91 l9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgvL92 L9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgvL91 L9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5dgvm01 m0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5dgvM01 M0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5dgvm11 m1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5dgvM11 M1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5dgvm31 m3:2-195 RPL13 RPL13 RPL13
e5dgvM31 M3:2-194 RPL13 RPL13 RPL13
e5dgvm41 m4:2-138 SH3 SH3 SH3
e5dgvM41 M4:3-138 SH3 SH3 SH3
e5dgvm51 m5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgvM51 M5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgvm61 m6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5dgvM61 M6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5dgvm71 m7:2-156 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5dgvM71 M7:2-184 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5dgvm81 m8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgvM81 M8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgvm92 m9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5dgvm91 m9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5dgvM91 M9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5dgvM92 M9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5dgvn02 n0:70-172 GP2-like RplX-like RplX-like
e5dgvn01 n0:1-69 GP2-like RplX-like RplX-like
e5dgvN02 N0:70-172 GP2-like RplX-like RplX-like
e5dgvN01 N0:1-69 GP2-like RplX-like RplX-like
e5dgvn11 n1:2-160 SH3 SH3 SH3
e5dgvN11 N1:2-160 SH3 SH3 SH3
e5dgvn21 n2:11-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5dgvN21 N2:9-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5dgvn31 n3:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgvN31 N3:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgvn41 n4:1-135 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgvN41 N4:1-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5dgvn51 n5:23-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgvN51 N5:22-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5dgvn61 n6:2-127 SH3 SH3 SH3
e5dgvN61 N6:2-127 SH3 SH3 SH3
e5dgvn71 n7:2-136 SH3 SH3 SH3
e5dgvN71 N7:2-136 SH3 SH3 SH3
e5dgvn81 n8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgvN81 N8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5dgvn91 n9:2-59 RPL29 RPL29 RPL29
e5dgvN91 N9:2-59 RPL29 RPL29 RPL29
e5dgvo01 o0:6-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgvO01 O0:9-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5dgvo11 o1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5dgvO11 O1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5dgvo21 o2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5dgvO21 O2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5dgvo31 o3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5dgvO31 O3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5dgvo41 o4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5dgvO41 O4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5dgvo51 o5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5dgvO51 O5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5dgvo61 o6:2-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5dgvO61 O6:2-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5dgvo71 o7:2-88 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvO71 O7:2-88 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvo81 o8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5dgvO81 O8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5dgvo91 o9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5dgvO91 O9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5dgvp01 p0:3-107,p0:184-198 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e5dgvq01 q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvQ01 Q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvq11 q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5dgvQ11 Q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5dgvq21 q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvQ21 Q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvq31 q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvQ31 Q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5dgvs01 s0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5dgvS01 S0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5dgvs12 s1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5dgvs11 s1:114-235 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5dgvS11 S1:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5dgvS12 S1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5dgvs22 s2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5dgvs23 s2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5dgvs21 s2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgvS23 S2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5dgvS21 S2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5dgvS22 S2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5dgvs31 s3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5dgvs32 s3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5dgvS31 S3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5dgvS32 S3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5dgvs43 s4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvs41 s4:176-261 SH3 SH3 SH3
e5dgvs42 s4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgvS42 S4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5dgvS41 S4:176-261 SH3 SH3 SH3
e5dgvS43 S4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgvs51 s5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5dgvS51 S5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5dgvs61 s6:1-218 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5dgvS61 S6:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5dgvs72 s7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgvs71 s7:2-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgvS71 S7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgvS72 S7:4-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5dgvs81 s8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgvS81 S8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5dgvs91 s9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgvS91 S9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5dgvsR1 sR:2-319 beta-propeller-like beta-propeller 7-bladed
e5dgvSR1 SR:2-319 beta-propeller-like beta-propeller 7-bladed