Domain ID e5fj8A1

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  • A: a+b complex topology
  • X: N-terminal domain in RNA-polymerase beta-prime subunit
  • H: N-terminal domain in RNA-polymerase beta-prime subunit
  • T: N-terminal domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_1
UID: 001820995
Type: Manual and representative domain
Range: A:2-358
Ligands: ZN
PDB: 5fj8
PDB Description: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1
UniProt: P04051
Hsap BLAST neighbor: O14802
Species: Saccharomyces cerevisiae

Structure of domain e5fj8A1

Domains in the same chain:

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e5fj8A1 A:2-358 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fj8A2 A:359-402,A:466-551 cradle loop barrel RIFT-related double psi
e5fj8A3 A:403-465 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fj8A4 A:552-710 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fj8A5 A:711-919 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fj8A9 A:920-1084 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fj8A6 A:1085-1136,A:1318-1460 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fj8A7 A:1137-1164,A:1272-1317 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fj8A8 A:1165-1271 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5fj8A1 A:2-358 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fj8A2 A:359-402,A:466-551 cradle loop barrel RIFT-related double psi
e5fj8A3 A:403-465 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fj8A4 A:552-710 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fj8A5 A:711-919 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fj8A9 A:920-1084 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fj8A6 A:1085-1136,A:1318-1460 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fj8A7 A:1137-1164,A:1272-1317 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fj8A8 A:1165-1271 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fj8B2 B:36-200,B:376-516 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fj8B4 B:201-375 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fj8B7 B:517-605 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5fj8B5 B:606-745 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fj8B6 B:746-782,B:907-1029 cradle loop barrel RIFT-related double psi
e5fj8B3 B:783-906 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5fj8B1 B:1030-1149 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fj8C1 C:1-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fj8C2 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5fj8D1 D:1-71,D:98-161 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5fj8E1 E:1-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5fj8E2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5fj8F1 F:71-153 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5fj8G1 G:2-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5fj8G2 G:79-212 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fj8H1 H:1-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fj8I1 I:1-42 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fj8J1 J:1-67 HTH RPB10 RPB10
e5fj8K1 K:42-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fj8L1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fj8M1 M:71-262 triple barrel triple barrel Rap30/74 interaction domains-like
e5fj8N1 N:274-422 triple barrel triple barrel Rap30/74 interaction domains-like
e5fj8O5 O:31-129 HTH HTH winged
e5fj8O4 O:130-282 HTH HTH winged
e5fj8O3 O:283-371,O:449-479 HTH HTH winged
e5fj8O1 O:480-567 HTH HTH winged
e5fj8O2 O:568-654 Long alpha-hairpin RPC62 helical hairpin domain RPC62 helical hairpin domain
e5fj8P1 P:171-189,P:215-271,P:305-317 HTH HTH winged