Domain ID e5fmfA6

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  • A: a+b complex topology
  • X: helical domain in yeast RNA-polymerases
  • H: third helical domain in yeast RNA-polymerase II beta-prime subunit
  • T: third helical domain in yeast RNA-polymerase II beta-prime subunit
  • F: RNA_pol_Rpb1_6
UID: 001715196
Type: Automatic domain
Parent: e1twfA11
Range: A:872-1059
PDB: 5fmf
PDB Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
UniProt: P04050
Hsap BLAST neighbor: P24928
Species: Saccharomyces cerevisiae

Structure of domain e5fmfA6

Domains in the same chain:

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e5fmfA8 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fmfA1 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5fmfA2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fmfA5 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fmfA4 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fmfA6 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fmfA3 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fmfA7 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fmfA9 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5fmf12 1:294-538 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5fmf11 1:549-775,1:778-785 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5fmf22 2:136-255 RuvA-C Elongation factor TFIIS domain 2/ Kix domain of creb binding protein Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5fmf21 2:256-309 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fmfA8 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fmfA1 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5fmfA2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fmfA5 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fmfA4 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fmfA6 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fmfA3 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fmfA7 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fmfA9 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fmfB5 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fmfB3 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fmfB7 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5fmfB4 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fmfB2 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5fmfB6 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5fmfB1 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fmfC2 C:3-41,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fmfC1 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5fmfD1 D:3-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5fmfE1 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5fmfE2 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5fmfF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5fmfG2 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5fmfG1 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fmfH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fmfI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fmfI1 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fmfJ1 J:1-65 HTH RPB10 RPB10
e5fmfK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fmfL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fmfM1 M:2-61 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5fmfM2 M:228-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5fmfO1 O:4-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5fmfO2 O:55-120 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5fmfP3 P:17-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fmfP1 P:67-213 HTH HTH Cyclin-like
e5fmfP2 P:233-340 HTH HTH Cyclin-like
e5fmfQ2 Q:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5fmfQ1 Q:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5fmfR1 R:12-95 HTH HTH winged
e5fmfR2 R:119-160 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fmfS1 S:125-188 HTH HTH winged
e5fmfS2 S:189-247 HTH HTH winged
e5fmfU1 U:94-396 triple barrel triple barrel Rap30/74 interaction domains-like
e5fmfV1 V:54-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5fmfV2 V:291-359 HTH HTH winged
e5fmfX1 X:2-64 TFB5-related TFB5-related TFB5-related
e5fmfY3 Y:18-244 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5fmfY2 Y:504-718 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases