ECOD: domain e5fmfA6

Domain ID e5fmfA6

A: a+b complex topology
X: helical domain in yeast RNA-polymerases
H: third helical domain in yeast RNA-polymerase II beta-prime subunit
T: third helical domain in yeast RNA-polymerase II beta-prime subunit
F: RNA_pol_Rpb1_6

UID:	001715196
Type:	Automatic domain
Parent:	e1twfA11
Range:	A:872-1059
PDB:	5fmf
PDB Description:	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
UniProt:	P04050
Hsap BLAST neighbor:	P24928
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e5fmfA8	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5fmfA1	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e5fmfA2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fmfA5	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5fmfA4	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5fmfA6	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fmfA3	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5fmfA7	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fmfA9	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5fmf12	1:294-538	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5fmf11	1:549-775,1:778-785	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5fmf22	2:136-255	RuvA-C	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5fmf21	2:256-309	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5fmfA8	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5fmfA1	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e5fmfA2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fmfA5	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5fmfA4	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5fmfA6	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fmfA3	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5fmfA7	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fmfA9	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fmfB5	B:20-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fmfB3	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fmfB7	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5fmfB4	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fmfB2	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e5fmfB6	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5fmfB1	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fmfC2	C:3-41,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5fmfC1	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5fmfD1	D:3-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5fmfE1	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5fmfE2	E:143-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5fmfF1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5fmfG2	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5fmfG1	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5fmfH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5fmfI2	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5fmfI1	I:50-120	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5fmfJ1	J:1-65	HTH	RPB10	RPB10
e5fmfK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5fmfL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5fmfM1	M:2-61	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5fmfM2	M:228-286	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5fmfO1	O:4-54	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5fmfO2	O:55-120	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5fmfP3	P:17-68	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5fmfP1	P:67-213	HTH	HTH	Cyclin-like
e5fmfP2	P:233-340	HTH	HTH	Cyclin-like
e5fmfQ2	Q:61-156	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5fmfQ1	Q:157-240	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5fmfR1	R:12-95	HTH	HTH	winged
e5fmfR2	R:119-160	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5fmfS1	S:125-188	HTH	HTH	winged
e5fmfS2	S:189-247	HTH	HTH	winged
e5fmfU1	U:94-396	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5fmfV1	V:54-227	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5fmfV2	V:291-359	HTH	HTH	winged
e5fmfX1	X:2-64	TFB5-related	TFB5-related	TFB5-related
e5fmfY3	Y:18-244	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5fmfY2	Y:504-718	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases