Domain ID e5fywB6

Download files:
  • A: a+b complex topology
  • X: insertion domain in beta subunit of DNA dependent RNA-polymerase
  • H: insertion domain in beta subunit of DNA dependent RNA-polymerase
  • T: insertion domain in beta subunit of DNA dependent RNA-polymerase
  • F: RNA_pol_Rpb2_2
UID: 001831332
Type: Automatic domain
Parent: e1twfB5
Range: B:219-404
PDB: 5fyw
PDB Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
UniProt: P08518
Hsap BLAST neighbor: P30876
Species: Saccharomyces cerevisiae

Structure of domain e5fywB6

Domains in the same chain:

Download Pymol

e5fywB1 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fywB6 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fywB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5fywB7 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fywB5 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5fywB4 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5fywB2 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5fywA5 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fywA8 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5fywA2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fywA3 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fywA4 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fywA6 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fywA7 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fywA1 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fywA9 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fywB1 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fywB6 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fywB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5fywB7 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fywB5 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5fywB4 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5fywB2 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fywC1 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fywC2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5fywD1 D:46-74,D:118-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5fywE2 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5fywE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5fywF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5fywG2 G:1-80 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5fywG1 G:81-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fywH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fywI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fywI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fywJ1 J:1-65 HTH RPB10 RPB10
e5fywK1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fywL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fywM3 M:16-58,M:124-127 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fywM2 M:128-228 HTH HTH Cyclin-like
e5fywM1 M:229-326 HTH HTH Cyclin-like
e5fywO2 O:61-157 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5fywO1 O:158-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5fywQ1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e5fywR1 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5fywR2 R:291-370 HTH HTH winged
e5fywU2 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5fywU1 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5fywV2 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5fywV1 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5fywW2 W:6-99 HTH HTH winged
e5fywW1 W:100-169 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fywX2 X:123-187 HTH HTH winged
e5fywX1 X:188-249 HTH HTH winged
e5fywX3 X:256-280 HTH HTH winged