Domain ID e5fz5M3

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: TF_Zn_Ribbon
UID: 001879359
Type: Automatic domain
Parent: e3k7aM1
Range: M:16-58,M:124-127
Ligands: ZN
PDB: 5fz5
PDB Description: TRANSCRIPTION INITIATION FACTOR IIB
UniProt: P29055
Species: Saccharomyces cerevisiae

Structure of domain e5fz5M3

Domains in the same chain:

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e5fz5M3 M:16-58,M:124-127 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fz5M1 M:128-228 HTH HTH Cyclin-like
e5fz5M2 M:229-326 HTH HTH Cyclin-like

Domains in the same PDB:

e5fz5A1 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5fz5A4 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5fz5A2 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5fz5A3 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5fz5A7 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5fz5A5 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5fz5A9 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5fz5A6 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fz5A8 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5fz5B7 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fz5B2 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5fz5B1 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5fz5B6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5fz5B3 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5fz5B4 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5fz5B5 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5fz5C1 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fz5C2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5fz5D1 D:46-74,D:118-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5fz5E1 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5fz5E2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5fz5F1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5fz5G1 G:1-80 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5fz5G2 G:81-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fz5H1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5fz5I2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fz5I1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fz5J1 J:1-65 HTH RPB10 RPB10
e5fz5K1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5fz5L1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fz5M3 M:16-58,M:124-127 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fz5M1 M:128-228 HTH HTH Cyclin-like
e5fz5M2 M:229-326 HTH HTH Cyclin-like
e5fz5O1 O:61-157 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5fz5O2 O:158-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5fz5Q1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e5fz5R1 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5fz5R2 R:291-370 HTH HTH winged
e5fz5U2 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5fz5U1 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5fz5V2 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5fz5V1 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5fz5W2 W:6-99 HTH HTH winged
e5fz5W1 W:100-169 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5fz5X2 X:123-188 HTH HTH winged
e5fz5X1 X:189-249 HTH HTH winged
e5fz5X3 X:250-280 HTH HTH winged