Domain ID e5g5lF1

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  • A: alpha arrays
  • X: RPB6/omega subunit-like
  • H: RPB6/omega subunit-like
  • T: RPB6
  • F: RNA_pol_Rpb6
UID: 001868395
Type: Automatic domain
Parent: e1qklA1
Range: F:55-154
PDB: 5g5l
PDB Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2
UniProt: P20435
Hsap BLAST neighbor: P61218
Species: Saccharomyces cerevisiae

Structure of domain e5g5lF1

Domains in the same chain:

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e5g5lF1 F:55-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6

Domains in the same PDB:

e5g5lA1 A:1-141,A:174-273,A:312-463 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5g5lA8 A:464-505,A:581-665 cradle loop barrel RIFT-related double psi
e5g5lA9 A:506-580 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5g5lA4 A:666-826 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5g5lA3 A:827-1053 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5g5lA6 A:1054-1180 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e5g5lA7 A:1181-1234,A:1545-1662 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5g5lA2 A:1235-1261,A:1498-1544 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5g5lA5 A:1262-1349,A:1440-1497 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5g5lB4 B:13-209,B:401-547 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5g5lB2 B:210-400 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5g5lB6 B:548-646 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5g5lB1 B:647-761 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5g5lB3 B:762-798,B:912-1040 cradle loop barrel RIFT-related double psi
e5g5lB7 B:799-911 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5g5lB5 B:1041-1203 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5g5lC1 C:31-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5g5lC2 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5g5lD1 D:12-48,D:80-100 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5g5lE2 E:4-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5g5lE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5g5lF1 F:55-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5g5lG2 G:14-126 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5g5lG1 G:126-170,G:215-250 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5g5lH1 H:3-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5g5lI1 I:2-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5g5lI2 I:68-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5g5lJ1 J:1-69 HTH RPB10 RPB10
e5g5lK1 K:42-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5g5lL1 L:27-69 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5g5lM1 M:8-112 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains
e5g5lN1 N:24-180 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains
e5g5lO1 O:48-248,O:324-551,O:581-614 Repetitive alpha hairpins ARM repeat ARM repeat