ECOD: domain e5gpnb1

Domain ID e5gpnb1

A: a+b two layers
X: 4Fe-4S ferredoxin
H: 4Fe-4S ferredoxin
T: 4Fe-4S ferredoxin
F: Fer4

UID:	002056179
Type:	Automatic domain
Parent:	e1jb0C1
Range:	b:64-212
Ligands:	SF4
PDB:	5gpn
PDB Description:	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8
Hsap BLAST neighbor:	O00217
Species:	Sus scrofa

Domains in the same chain:

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e5gpnb1	b:64-212	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin

Domains in the same PDB:

e5gpn01	0:1-261	Cytochrome c oxidase subunit III-like	Cytochrome c oxidase subunit III-like	Cytochrome c oxidase subunit III-like
e5gpn11	1:4-147	Mitochondrial cytochrome c oxidase subunit IV	Mitochondrial cytochrome c oxidase subunit IV	Mitochondrial cytochrome c oxidase subunit IV
e5gpn21	2:1-109	Repetitive alpha hairpins	Cytochrome c oxidase subunit E	Cytochrome c oxidase subunit E
e5gpn31	3:1-98	Rubredoxin-like	Rubredoxin-related	Cytochrome c oxidase Subunit F
e5gpn41	4:1-84	Mitochondrial cytochrome c oxidase subunit VIa	Mitochondrial cytochrome c oxidase subunit VIa	Mitochondrial cytochrome c oxidase subunit VIa
e5gpn51	5:11-85	Cytochrome c oxidase subunit h	Cytochrome c oxidase subunit h	Cytochrome c oxidase subunit h
e5gpn61	6:1-73	Mitochondrial cytochrome c oxidase subunit VIc	Mitochondrial cytochrome c oxidase subunit VIc	Mitochondrial cytochrome c oxidase subunit VIc
e5gpn71	7:1-56	Mitochondrial cytochrome c oxidase subunit VIIa	Mitochondrial cytochrome c oxidase subunit VIIa	Mitochondrial cytochrome c oxidase subunit VIIa
e5gpn81	8:6-54	Mitochondrial cytochrome c oxidase subunit VIIb	Mitochondrial cytochrome c oxidase subunit VIIb	Mitochondrial cytochrome c oxidase subunit VIIb
e5gpn91	9:1-47	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e5gpna1	a:61-207	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e5gpnA2	A:1-233	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnA1	A:234-446	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnAa1	Aa:74-154	ACP-like	Acyl-carrier protein (ACP)	Acyl-carrier protein (ACP)
e5gpnAc1	Ac:1-55	Mitochondrial complex I, MWFE subunit	Mitochondrial complex I, MWFE subunit	Mitochondrial complex I, MWFE subunit
e5gpnAe1	Ae:11-98	FATC domain	FATC domain	FATC domain
e5gpnAf1	Af:24-113	LYR protein	LYR protein	LYR protein
e5gpnAj1	Aj:29-161	Mitochondrial complex I, PDSW subunit	Mitochondrial complex I, PDSW subunit	Mitochondrial complex I, PDSW subunit
e5gpnAk1	Ak:10-160	LYR protein	LYR protein	LYR protein
e5gpnAl1	Al:5-100	Mitochondrial complex I, B14.5b subunit	Mitochondrial complex I, B14.5b subunit	Mitochondrial complex I, B14.5b subunit
e5gpnAm1	Am:46-72	Mitochondrial complex I, KFYI subunit	Mitochondrial complex I, KFYI subunit	Mitochondrial complex I, KFYI subunit
e5gpnb1	b:64-212	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e5gpnB1	B:21-235	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnB2	B:236-439	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnc1	c:47-273	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e5gpnc2	c:274-359	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e5gpnc3	c:360-456	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e5gpnC2	C:1-260	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e5gpnC1	C:261-379	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnd2	d:48-126	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e5gpnd1	d:127-216	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e5gpnD2	D:1-195	Cytochrome c-like	Cytochrome c	Cytochrome c
e5gpnD1	D:196-241	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e5gpne1	e:1-315	Sodium/proton antiporter subunits-like	Sodium/proton antiporter subunits-like	NADH-quinone oxidoreductase subunit 8 (Nqo8)-related
e5gpnE1	E:1-69	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e5gpnE2	E:70-196	ISP domain	ISP domain	ISP domain
e5gpnf1	f:2-347	Sodium/proton antiporter subunits-like	Sodium/proton antiporter subunits-like	NADH-quinone oxidoreductase subunit L (NuoL)-related
e5gpnF1	F:5-110	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpng1	g:4-109	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A
e5gpnG1	G:1-81	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnh1	h:2-458	Sodium/proton antiporter subunits-like	Sodium/proton antiporter subunits-like	NADH-quinone oxidoreductase subunit L (NuoL)-related
e5gpnH1	H:15-78	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpni1	i:1-90	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K
e5gpnI1	I:46-78	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein
e5gpnj1	j:5-598	Sodium/proton antiporter subunits-like	Sodium/proton antiporter subunits-like	NADH-quinone oxidoreductase subunit L (NuoL)-related
e5gpnJ1	J:1-62	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnk1	k:2-106,k:137-173	NADH-quinone oxidoreductase subunit J	NADH-quinone oxidoreductase subunit J	NADH-quinone oxidoreductase subunit J
e5gpnK1	K:2-44	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnL1	L:1-62	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnm1	m:4-56	Mitochondrial complex I, B9 subunit	Mitochondrial complex I, B9 subunit	Mitochondrial complex I, B9 subunit
e5gpnM1	M:1-233	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnM2	M:234-446	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnn1	n:14-96	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e5gpnN1	N:21-235	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpnN2	N:236-439	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e5gpno1	o:18-68	cytochrome bc1 complex 11 kDa protein-like	CHCH domain	CHCH domain
e5gpnO2	O:1-260	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e5gpnO1	O:261-379	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnp1	p:45-287,p:312-358	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e5gpnP1	P:1-195	Cytochrome c-like	Cytochrome c	Cytochrome c
e5gpnP2	P:196-241	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e5gpnq1	q:61-256	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5gpnQ1	Q:1-69	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e5gpnQ2	Q:70-196	ISP domain	ISP domain	ISP domain
e5gpnr1	r:30-92	Preprotein translocase subunit YajC	Preprotein translocase subunit YajC	Preprotein translocase subunit YajC
e5gpnR1	R:5-110	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpns1	s:1-43	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
e5gpnS1	S:1-78	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnt1	t:74-154	ACP-like	Acyl-carrier protein (ACP)	Acyl-carrier protein (ACP)
e5gpnT1	T:15-78	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnU1	U:46-78	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein
e5gpnV1	V:9-45	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e5gpnw1	w:60-166	Putative oxidoreductase	Putative oxidoreductase	Putative oxidoreductase
e5gpnW1	W:51-219	Nqo5-like	Nqo5-like	Nqo5-like
e5gpnx1	x:74-119	Rubredoxin-like	Rubredoxin-related	Cytochrome c oxidase Subunit F
e5gpny1	y:1-514	Cytochrome c oxidase subunit I-like	Cytochrome c oxidase subunit I-like	Cytochrome c oxidase subunit I-like
e5gpnY3	Y:31-104	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e5gpnY1	Y:105-159	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e5gpnY2	Y:160-240	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e5gpnY6	Y:241-300	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e5gpnY4	Y:301-370,Y:519-716	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e5gpnY5	Y:371-518	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e5gpnz2	z:1-90	Cytochrome c oxidase subunit II-like, transmembrane region	Cytochrome c oxidase subunit II-like, transmembrane region	Cytochrome c oxidase subunit II-like, transmembrane region
e5gpnz1	z:91-227	Cupredoxin-like	Cupredoxin-related	Cupredoxin-related
e5gpnZ3	Z:89-118,Z:433-463	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e5gpnZ2	Z:119-161,Z:360-432	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e5gpnZ1	Z:162-359	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit