Domain ID e5iy6B1

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  • A: a+b complex topology
  • X: inserted a+b domain in yeast RNA polymerase beta subunit
  • H: inserted a+b domain in yeast RNA polymerase beta subunit
  • T: inserted a+b domain in yeast RNA polymerase beta subunit
  • F: RNA_pol_Rpb2_4
UID: 001831586
Type: Automatic domain
Parent: e1twfB7
Range: B:529-618
PDB: 5iy6
PDB Description: DNA-directed RNA polymerase II subunit RPB2
UniProt: P30876
Hsap BLAST neighbor: P30876
Species: Homo sapiens

Structure of domain e5iy6B1

Domains in the same chain:

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e5iy6B2 B:10-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iy6B4 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iy6B1 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5iy6B5 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iy6B3 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5iy6B6 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5iy6B7 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5iy601 0:54-241 HAD domain-like HAD domain-related vWA-like
e5iy611 1:1-62 TFB5-related TFB5-related TFB5-related
e5iy621 2:388-459 TFB5-related TFB5-related TFB5-related
e5iy631 3:5-72,3:100-231 HAD domain-like HAD domain-related vWA-like
e5iy6A1 A:10-157,A:180-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5iy6A4 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e5iy6A3 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iy6A9 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5iy6A6 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5iy6A8 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iy6A2 A:1083-1135,A:1361-1485 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5iy6A7 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iy6A5 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iy6B2 B:10-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iy6B4 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iy6B1 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5iy6B5 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iy6B3 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5iy6B6 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5iy6B7 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iy6C1 C:1-42,C:179-275 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iy6C2 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5iy6D1 D:14-142 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5iy6E2 E:1-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5iy6E1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5iy6F1 F:42-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5iy6G1 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5iy6G2 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iy6H1 H:1-150 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iy6I1 I:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy6I2 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy6J1 J:1-67 HTH RPB10 RPB10
e5iy6K1 K:1-117 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iy6L1 L:13-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy6M3 M:7-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy6M2 M:105-207 HTH HTH Cyclin-like
e5iy6M1 M:208-316 HTH HTH Cyclin-like
e5iy6N2 N:9-51,N:308-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iy6N1 N:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iy6O1 O:1-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iy6O2 O:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iy6P2 P:153-255 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iy6P1 P:256-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iy6Q2 Q:11-100,Q:175-204 HTH HTH winged
e5iy6Q1 Q:101-174 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy6R2 R:75-146 HTH HTH winged
e5iy6R1 R:147-206 HTH HTH winged
e5iy6S1 S:5-54,S:93-180 triple barrel triple barrel Rap30/74 interaction domains-like
e5iy6T1 T:2-119 triple barrel triple barrel Rap30/74 interaction domains-like
e5iy6T2 T:175-238 HTH HTH winged
e5iy6U2 U:132-239 RuvA-C Elongation factor TFIIS domain 2/ Kix domain of creb binding protein Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5iy6U1 U:240-301 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy6V1 V:244-492 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5iy6V2 V:493-718 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases