Domain ID e5iy9B6

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  • A: a+b complex topology
  • X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase
  • H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase
  • T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase
  • F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3
UID: 001831733
Type: Automatic domain
Parent: e4c2mB1
Range: B:10-67,B:87-200,B:392-528
PDB: 5iy9
PDB Description: DNA-directed RNA polymerase II subunit RPB2
UniProt: P30876
Hsap BLAST neighbor: P30876
Species: Homo sapiens

Structure of domain e5iy9B6

Domains in the same chain:

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e5iy9B6 B:10-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iy9B3 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iy9B4 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5iy9B2 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iy9B5 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5iy9B7 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5iy9B1 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5iy901 0:54-241 HAD domain-like HAD domain-related vWA-like
e5iy911 1:1-62 TFB5-related TFB5-related TFB5-related
e5iy921 2:388-459 TFB5-related TFB5-related TFB5-related
e5iy931 3:5-72,3:100-231 HAD domain-like HAD domain-related vWA-like
e5iy9A5 A:10-157,A:180-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5iy9A2 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e5iy9A6 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iy9A9 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5iy9A4 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5iy9A1 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iy9A8 A:1083-1135,A:1361-1485 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5iy9A7 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iy9A3 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iy9B6 B:10-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iy9B3 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iy9B4 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5iy9B2 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iy9B5 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5iy9B7 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5iy9B1 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iy9C2 C:1-42,C:179-275 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iy9C1 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5iy9D1 D:14-142 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5iy9E2 E:1-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5iy9E1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5iy9F1 F:42-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5iy9G2 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5iy9G1 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iy9H1 H:1-150 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iy9I2 I:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy9I1 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy9J1 J:1-67 HTH RPB10 RPB10
e5iy9K1 K:1-117 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iy9L1 L:13-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy9M3 M:7-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy9M2 M:68-208 HTH HTH Cyclin-like
e5iy9M1 M:209-316 HTH HTH Cyclin-like
e5iy9N1 N:9-51,N:308-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iy9N2 N:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iy9O1 O:1-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iy9O2 O:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iy9P1 P:153-255 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iy9P2 P:256-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iy9Q2 Q:11-103 HTH HTH winged
e5iy9Q1 Q:104-204 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iy9R1 R:75-146 HTH HTH winged
e5iy9R2 R:147-206 HTH HTH winged
e5iy9R3 R:208-239 HTH HTH winged
e5iy9S1 S:5-54,S:93-180 triple barrel triple barrel Rap30/74 interaction domains-like
e5iy9T1 T:2-119 triple barrel triple barrel Rap30/74 interaction domains-like
e5iy9T2 T:175-238 HTH HTH winged
e5iy9V2 V:244-492 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5iy9V1 V:493-718 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases