ECOD: domain e5iycE2

Domain ID e5iycE2

A: a/b three-layered sandwiches
X: Restriction endonuclease-like
H: Eukaryotic RPB5 N-terminal domain
T: Eukaryotic RPB5 N-terminal domain
F: RNA_pol_Rpb5_N

UID:	001831867
Type:	Automatic domain
Parent:	e1dzfA2
Range:	E:1-138
PDB:	5iyc
PDB Description:	DNA-directed RNA polymerase II subunit RPB5
UniProt:	P19388
Hsap BLAST neighbor:	P19388
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e5iycE2	E:1-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5iycE1	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit

Domains in the same PDB:

e5iycA6	A:10-157,A:180-350	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5iycA7	A:351-388,A:450-533	cradle loop barrel	RIFT-related	double psi
e5iycA3	A:389-449	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iycA2	A:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5iycA5	A:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5iycA4	A:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iycA9	A:1083-1135,A:1361-1485	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5iycA8	A:1136-1164,A:1298-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iycA1	A:1165-1297	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iycB5	B:10-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iycB7	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iycB4	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5iycB2	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iycB3	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e5iycB6	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5iycB1	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iycC2	C:1-42,C:179-275	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5iycC1	C:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5iycD1	D:14-142	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5iycE2	E:1-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5iycE1	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5iycF1	F:42-127	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5iycG1	G:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5iycG2	G:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5iycH1	H:1-150	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5iycI2	I:1-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iycI1	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iycJ1	J:1-67	HTH	RPB10	RPB10
e5iycK1	K:1-117	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5iycL1	L:13-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iycM1	M:7-67	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iycM3	M:68-208	HTH	HTH	Cyclin-like
e5iycM2	M:209-316	HTH	HTH	Cyclin-like
e5iycN1	N:9-51,N:308-321	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5iycN2	N:322-376	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5iycO2	O:1-53	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e5iycO1	O:54-99	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e5iycP2	P:153-255	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5iycP1	P:256-337	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e5iycQ2	Q:11-103	HTH	HTH	winged
e5iycQ1	Q:104-204	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5iycR1	R:75-146	HTH	HTH	winged
e5iycR2	R:147-206	HTH	HTH	winged
e5iycR3	R:208-239	HTH	HTH	winged
e5iycS1	S:5-54,S:93-180	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5iycT1	T:2-119	triple barrel	triple barrel	Rap30/74 interaction domains-like
e5iycT2	T:175-238	HTH	HTH	winged
e5iycU3	U:132-239	RuvA-C	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5iycU2	U:242-301	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related