Domain ID e5iydA9

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  • A: a+b complex topology
  • X: N-terminal domain in RNA-polymerase beta-prime subunit
  • H: N-terminal domain in RNA-polymerase beta-prime subunit
  • T: N-terminal domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_1
UID: 001879539
Type: Automatic domain
Parent: e1twfA4
Range: A:10-157,A:180-350
Ligands: ZN
PDB: 5iyd
PDB Description: DNA-directed RNA polymerase II subunit RPB1
UniProt: P24928
Hsap BLAST neighbor: P24928
Species: Homo sapiens

Structure of domain e5iydA9

Domains in the same chain:

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e5iydA9 A:10-157,A:180-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5iydA2 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e5iydA1 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iydA8 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5iydA6 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5iydA7 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iydA3 A:1083-1135,A:1361-1485 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5iydA5 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iydA4 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5iydA9 A:10-157,A:180-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5iydA2 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e5iydA1 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5iydA8 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5iydA6 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5iydA7 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5iydA3 A:1083-1135,A:1361-1485 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5iydA5 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iydA4 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5iydB6 B:10-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iydB2 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5iydB1 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5iydB5 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5iydB3 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e5iydB7 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5iydB4 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5iydC2 C:1-42,C:179-275 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iydC1 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5iydD1 D:14-142 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5iydE2 E:1-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5iydE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5iydF1 F:42-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5iydG1 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5iydG2 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iydH1 H:1-150 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5iydI2 I:1-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iydI1 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iydJ1 J:1-67 HTH RPB10 RPB10
e5iydK1 K:1-117 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5iydL1 L:13-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iydM1 M:7-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iydM2 M:68-208 HTH HTH Cyclin-like
e5iydM3 M:209-316 HTH HTH Cyclin-like
e5iydN2 N:9-51,N:308-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iydN1 N:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iydO2 O:1-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5iydO1 O:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5iydP1 P:153-255 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iydP2 P:256-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5iydQ1 Q:11-103 HTH HTH winged
e5iydQ2 Q:104-204 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5iydR1 R:75-146 HTH HTH winged
e5iydR2 R:147-206 HTH HTH winged
e5iydR3 R:208-239 HTH HTH winged
e5iydS1 S:5-54,S:93-180 triple barrel triple barrel Rap30/74 interaction domains-like
e5iydT1 T:2-119 triple barrel triple barrel Rap30/74 interaction domains-like
e5iydT2 T:175-238 HTH HTH winged