Domain ID e5lybl41

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001922369
Type: Automatic domain
Parent: e1dmgA1
Range: l4:2-269
Ligands: MG OHX
PDB: 5lyb
PDB Description: 60S ribosomal protein L4-A
UniProt: P10664
Hsap BLAST neighbor: P36578
Species: Saccharomyces cerevisiae

Structure of domain e5lybl41

Domains in the same chain:

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e5lybl41 l4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5lybl42 l4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)

Domains in the same PDB:

e5lybc01 c0:1-98 HTH HTH winged
e5lybC01 C0:1-96 HTH HTH winged
e5lybc11 c1:2-147 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybC11 C1:2-156 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybc21 c2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5lybC21 C2:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e5lybc32 c3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5lybc31 c3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5lybC32 C3:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5lybC31 C3:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5lybc41 c4:10-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5lybC41 C4:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5lybc51 c5:4-138 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5lybC51 C5:8-131 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e5lybc61 c6:2-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5lybC61 C6:3-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5lybc71 c7:2-122 HTH HTH FF domain
e5lybC71 C7:2-126 HTH HTH FF domain
e5lybc81 c8:2-146 HhH/H2TH H2TH H2TH
e5lybC81 C8:2-146 HhH/H2TH H2TH H2TH
e5lybc91 c9:2-144 HTH HTH winged
e5lybC91 C9:2-144 HTH HTH winged
e5lybd01 d0:12-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5lybD01 D0:15-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e5lybd11 d1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5lybD11 D1:1-87 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e5lybd21 d2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5lybd22 d2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5lybD22 D2:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5lybD21 D2:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5lybd31 d3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybD31 D3:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybd41 d4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5lybD41 D4:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5lybd51 d5:37-105 HTH HTH winged
e5lybD51 D5:36-105 HTH HTH winged
e5lybd61 d6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5lybD61 D6:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5lybd71 d7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybD71 D7:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybd81 d8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybD81 D8:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybd91 d9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5lybD91 D9:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5lybe01 e0:2-63 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5lybE01 E0:2-61 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5lybe11 e1:77-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybE11 E1:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybl21 l2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybl22 l2:99-253 SH3 SH3 SH3
e5lybL22 L2:2-98 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybL21 L2:99-253 SH3 SH3 SH3
e5lybl31 l3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5lybL31 L3:2-387 cradle loop barrel RIFT-related Alanine racemase-C
e5lybl42 l4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5lybl41 l4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5lybL42 L4:270-362 C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p) C-terminal helical region in 60S ribosomal protein L4 (L4p)
e5lybL41 L4:2-269 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e5lybl51 l5:4-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5lybL51 L5:2-297 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5lybl61 l6:2-176 SH3 SH3 SH3
e5lybL61 L6:2-109,L6:129-176 SH3 SH3 SH3
e5lybl71 l7:22-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5lybL71 L7:23-244 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e5lybl81 l8:24-254 Bacillus chorismate mutase-like L30e-like L30e-like
e5lybL81 L8:24-256 Bacillus chorismate mutase-like L30e-like L30e-like
e5lybl91 l9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5lybl92 l9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5lybL92 L9:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5lybL91 L9:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e5lybm01 m0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5lybM01 M0:2-221 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e5lybm11 m1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5lybM11 M1:6-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e5lybm31 m3:2-195 RPL13 RPL13 RPL13
e5lybM31 M3:2-194 RPL13 RPL13 RPL13
e5lybm41 m4:2-138 SH3 SH3 SH3
e5lybM41 M4:3-138 SH3 SH3 SH3
e5lybm51 m5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5lybM51 M5:2-204 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5lybm61 m6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5lybM61 M6:3-199 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e5lybm71 m7:2-156 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5lybM71 M7:2-184 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e5lybm81 m8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5lybM81 M8:2-186 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5lybm92 m9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5lybm91 m9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5lybM91 M9:57-189 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e5lybM92 M9:2-56 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e5lybn01 n0:70-172 GP2-like RplX-like RplX-like
e5lybn02 n0:1-69 GP2-like RplX-like RplX-like
e5lybN02 N0:70-172 GP2-like RplX-like RplX-like
e5lybN01 N0:1-69 GP2-like RplX-like RplX-like
e5lybn11 n1:2-160 SH3 SH3 SH3
e5lybN11 N1:2-160 SH3 SH3 SH3
e5lybn21 n2:11-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5lybN21 N2:9-108 Ribosomal protein L22e Ribosomal protein L22e Ribosomal protein L22e
e5lybn31 n3:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5lybN31 N3:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5lybn41 n4:1-135 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5lybN41 N4:1-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e5lybn51 n5:23-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5lybN51 N5:22-142 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5lybn61 n6:2-127 SH3 SH3 SH3
e5lybN61 N6:2-127 SH3 SH3 SH3
e5lybn71 n7:2-136 SH3 SH3 SH3
e5lybN71 N7:2-136 SH3 SH3 SH3
e5lybn81 n8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5lybN81 N8:2-149 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e5lybn91 n9:2-59 RPL29 RPL29 RPL29
e5lybN91 N9:2-59 RPL29 RPL29 RPL29
e5lybo01 o0:6-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5lybO01 O0:9-105 Bacillus chorismate mutase-like L30e-like L30e-like
e5lybo11 o1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5lybO11 O1:4-112 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e5lybo21 o2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5lybO21 O2:2-128 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e5lybo31 o3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5lybO31 O3:2-107 cradle loop barrel RIFT-related Alanine racemase-C
e5lybo41 o4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5lybO41 O4:2-113 Glucocorticoid receptor-like RPL34 RPL34
e5lybo51 o5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5lybO51 O5:2-120 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e5lybo61 o6:24-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5lybO61 O6:24-100 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e) 60S ribosomal protein rpL36 (L36e)
e5lybo71 o7:2-88 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybO71 O7:2-88 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybo81 o8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5lybO81 O8:2-78 SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related
e5lybo91 o9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5lybO91 O9:2-51 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e5lybp01 p0:3-107,p0:184-198 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e5lybq01 q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybQ01 Q0:77-128 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybq11 q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5lybQ11 Q1:1-25 Ribosomal protein L41-A Ribosomal protein L41-A Ribosomal protein L41-A
e5lybq21 q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybQ21 Q2:2-106 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybq31 q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybQ31 Q3:2-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5lybs01 s0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5lybS01 S0:2-207 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e5lybs11 s1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5lybs12 s1:114-235 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5lybS12 S1:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5lybS11 S1:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5lybs23 s2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5lybs21 s2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5lybs22 s2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5lybS23 S2:34-108 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e5lybS22 S2:176-250 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5lybS21 S2:109-175 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e5lybs31 s3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5lybs32 s3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5lybS31 S3:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e5lybS32 S3:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e5lybs42 s4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5lybs43 s4:176-261 SH3 SH3 SH3
e5lybs41 s4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybS41 S4:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5lybS42 S4:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5lybS43 S4:176-261 SH3 SH3 SH3
e5lybs51 s5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5lybS51 S5:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5lybs61 s6:1-218 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5lybS61 S6:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e5lybs72 s7:2-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5lybs71 s7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5lybS71 S7:4-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5lybS72 S7:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5lybs81 s8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5lybS81 S8:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5lybs91 s9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5lybS91 S9:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5lybsM1 sM:23-85 Suppressor protein STM1 Suppressor protein STM1 Suppressor protein STM1
e5lybSM1 SM:9-141 Suppressor protein STM1 Suppressor protein STM1 Suppressor protein STM1
e5lybsR1 sR:2-319 beta-propeller-like beta-propeller 7-bladed
e5lybSR1 SR:2-319 beta-propeller-like beta-propeller 7-bladed