Domain ID e5m3mF1

Download files:
  • A: alpha arrays
  • X: RPB6/omega subunit-like
  • H: RPB6/omega subunit-like
  • T: RPB6
  • F: RNA_pol_Rpb6_1
UID: 001921513
Type: Automatic domain
Parent: e1twfF1
Range: F:57-154
PDB: 5m3m
PDB Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2
UniProt: P20435
Hsap BLAST neighbor: P61218
Species:

Structure of domain e5m3mF1

Domains in the same chain:

e5m3mF1 F:57-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6

Domains in the same PDB:

e5m3mA8 A:1-108,A:129-133,A:179-273,A:312-467 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5m3mA2 A:468-505,A:581-665 cradle loop barrel RIFT-related double psi
e5m3mA5 A:506-580 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5m3mA7 A:666-826 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5m3mA6 A:827-1053 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5m3mA9 A:1054-1180 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e5m3mA1 A:1181-1234,A:1545-1657 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5m3mA3 A:1235-1261,A:1489-1544 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5m3mA4 A:1262-1337,A:1441-1488 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5m3mB5 B:13-209,B:401-547 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5m3mB1 B:210-400 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5m3mB4 B:548-646 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5m3mB6 B:647-761 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5m3mB7 B:762-798,B:912-1040 cradle loop barrel RIFT-related double psi
e5m3mB3 B:799-911 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5m3mB2 B:1041-1203 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5m3mC2 C:31-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5m3mC1 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5m3mD1 D:12-48,D:80-100 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5m3mE1 E:4-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5m3mE2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5m3mF1 F:57-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5m3mG1 G:14-133 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5m3mG2 G:134-170,G:215-250 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5m3mH1 H:3-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5m3mI1 I:2-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5m3mI2 I:68-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5m3mJ1 J:1-69 HTH RPB10 RPB10
e5m3mK1 K:42-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5m3mL1 L:27-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5m3mM1 M:8-104 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains
e5m3mN1 N:24-166 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains