Domain ID e5m5wL1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: DNA_RNApol_7kD
UID: 001931238
Type: Automatic domain
Parent: e1twfL1
Range: L:28-70
Ligands: ZN
PDB: 5m5w
PDB Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4
UniProt: P40422
Hsap BLAST neighbor: P53803
Species:

Structure of domain e5m5wL1

Domains in the same chain:

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e5m5wL1 L:28-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e5m5wA6 A:1-141,A:172-270,A:312-463 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5m5wA1 A:464-505,A:581-665 cradle loop barrel RIFT-related double psi
e5m5wA8 A:506-580 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5m5wA5 A:666-826 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5m5wA9 A:827-1053 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5m5wA3 A:1054-1180 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e5m5wA7 A:1181-1234,A:1545-1663 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5m5wA4 A:1235-1261,A:1498-1544 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5m5wA2 A:1262-1352,A:1438-1497 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5m5wB3 B:11-209,B:401-547 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5m5wB4 B:210-400 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5m5wB1 B:548-646 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5m5wB5 B:647-761 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5m5wB7 B:762-798,B:912-1040 cradle loop barrel RIFT-related double psi
e5m5wB2 B:799-911 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5m5wB6 B:1041-1203 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5m5wC2 C:30-75,C:222-335 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5m5wC1 C:76-221 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5m5wD1 D:12-49,D:80-100 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5m5wE2 E:2-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5m5wE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5m5wF1 F:55-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5m5wG2 G:8-126 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5m5wG1 G:127-174,G:215-251 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5m5wH1 H:3-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5m5wI1 I:2-67 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5m5wI2 I:68-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5m5wJ1 J:1-69 HTH RPB10 RPB10
e5m5wK1 K:43-142 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5m5wL1 L:28-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5m5wM1 M:8-114 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains
e5m5wN1 N:22-180 triple barrel triple barrel RNA polymerase I subunits A49/A34.5 dimerization domains