Domain ID e5oqjB1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb2_6
UID: 002320795
Type: Automatic domain
Parent: e1twfB1
Range: B:814-850,B:975-1097
PDB: 5oqj
PDB Description: DNA-directed RNA polymerase II subunit RPB2
UniProt: P08518
Hsap BLAST neighbor: P30876
Species:

Structure of domain e5oqjB1

Domains in the same chain:

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e5oqjB7 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqjB4 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oqjB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5oqjB6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oqjB1 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5oqjB2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5oqjB5 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5oqj01 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqj31 3:8-79 RING/U-box-like RING/U-box-like RING/U-box
e5oqj32 3:80-145 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e5oqj41 4:22-285 HAD domain-like HAD domain-related vWA-like
e5oqj42 4:286-323 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqj51 5:2-67 TFB5-related TFB5-related TFB5-related
e5oqj61 6:123-307 HAD domain-like HAD domain-related vWA-like
e5oqj63 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqj62 6:375-457 RING/U-box-like RING/U-box-like Cysteine-rich domain
e5oqj72 7:363-545 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqj71 7:546-722 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqj73 7:723-770 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5oqjA8 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5oqjA7 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5oqjA3 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5oqjA5 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5oqjA6 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5oqjA2 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5oqjA4 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5oqjA9 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqjA1 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5oqjB7 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqjB4 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5oqjB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5oqjB6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5oqjB1 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5oqjB2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5oqjB5 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5oqjC1 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5oqjC2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5oqjD1 D:24-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5oqjE1 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5oqjE2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5oqjF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5oqjG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5oqjG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5oqjH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5oqjI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqjI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqjJ1 J:1-65 HTH RPB10 RPB10
e5oqjK1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5oqjL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqjM1 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5oqjM3 M:67-218 HTH HTH Cyclin-like
e5oqjM2 M:233-326 HTH HTH Cyclin-like
e5oqjO1 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5oqjO2 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5oqjQ1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e5oqjR2 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5oqjR1 R:291-351 HTH HTH winged
e5oqjU2 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5oqjU1 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5oqjV1 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5oqjV2 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5oqjX1 X:123-188 HTH HTH winged
e5oqjX3 X:189-249 HTH HTH winged
e5oqjX2 X:250-283 HTH HTH winged