Domain ID e5svag2

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: winged
  • F: TFIIF_beta
UID: 001888114
Type: Automatic domain
Parent: e2bbyA1
Range: g:291-359
PDB: 5sva
PDB Description: Transcription initiation factor IIF subunit beta
UniProt: P41896
Hsap BLAST neighbor: P13984
Species: Saccharomyces cerevisiae

Structure of domain e5svag2

Domains in the same chain:

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e5svag1 g:54-139,g:210-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5svag2 g:291-359 HTH HTH winged

Domains in the same PDB:

e5svaa1 a:447-508 TFB5-related TFB5-related TFB5-related
e5svaA2 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5svaA9 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e5svaA3 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5svaA4 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5svaA8 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5svaA6 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5svaA7 A:1060-1102,A:1301-1455 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5svaA5 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5svaA1 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5svab1 b:2-64 TFB5-related TFB5-related TFB5-related
e5svaB3 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5svaB5 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5svaB7 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5svaB2 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5svaB4 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5svaB1 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5svaB6 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5svac2 c:22-79 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5svac1 c:80-213 HTH HTH Cyclin-like
e5svaC2 C:3-37,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5svaC1 C:38-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5svad2 d:2-61 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5svad1 d:228-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5svaD1 D:3-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5svae1 e:4-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e5svae2 e:55-120 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e5svaE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5svaE1 E:143-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5svaf1 f:99-142,f:327-417 triple barrel triple barrel Rap30/74 interaction domains-like
e5svaF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5svag1 g:54-139,g:210-227 triple barrel triple barrel Rap30/74 interaction domains-like
e5svag2 g:291-359 HTH HTH winged
e5svaG2 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5svaG1 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5svah2 h:12-95 HTH HTH winged
e5svah1 h:119-160 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5svaH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5svai2 i:125-187 HTH HTH winged
e5svai1 i:188-250 HTH HTH winged
e5svaI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5svaI1 I:50-120 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5svaj2 j:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5svaj1 j:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e5svaJ1 J:1-65 HTH RPB10 RPB10
e5svaK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5svaL1 L:25-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5svaM1 M:1-50,M:100-192 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6
e5svaN1 N:23-173,N:194-210 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8
e5svaO1 O:4-115 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11
e5svaP1 P:182-687 Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 17
e5svaQ1 Q:2-107,Q:159-301 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e5svaR1 R:2-210 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e5svaS1 S:1-121 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22
e5svaU2 U:11-83 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e5svaU1 U:108-205 Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region
e5svaW1 W:3-133 Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21)
e5svaX1 X:16-107 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e5svaY3 Y:18-244 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5svaY2 Y:504-718 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5svaZ1 Z:294-538 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5svaZ2 Z:549-785 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases