Domain ID e5u0sa8

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  • A: a+b complex topology
  • X: central helical domain in RNA-polymerase beta-prime subunit
  • H: central helical domain in RNA-polymerase beta-prime subunit
  • T: central helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_5
UID: 002070813
Type: Automatic domain
Parent: e5fj8A6
Range: a:1063-1116,a:1338-1456
PDB: 5u0s
PDB Description: RNA polymerase II subunit Rpb1
UniProt: P36594
Hsap BLAST neighbor: P24928
Species: Schizosaccharomyces pombe

Structure of domain e5u0sa8

Domains in the same chain:

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e5u0sa3 a:2-342 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5u0sa6 a:340-525 cradle loop barrel RIFT-related double psi
e5u0sa1 a:526-668 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5u0sa7 a:669-877 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5u0sa4 a:878-1062 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5u0sa8 a:1063-1116,a:1338-1456 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5u0sa5 a:1145-1278 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5u0sa2 a:1272-1337 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5u0s31 3:2-104 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e5u0sa3 a:2-342 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5u0sa6 a:340-525 cradle loop barrel RIFT-related double psi
e5u0sa1 a:526-668 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5u0sa7 a:669-877 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5u0sa4 a:878-1062 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5u0sa8 a:1063-1116,a:1338-1456 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5u0sa5 a:1145-1278 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5u0sa2 a:1272-1337 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5u0sb3 b:10-57,b:77-121,b:149-203,b:391-527 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5u0sb2 b:204-390 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5u0sb4 b:528-616 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5u0sb7 b:617-802 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5u0sb6 b:803-839,b:964-1086 cradle loop barrel RIFT-related double psi
e5u0sb1 b:840-963 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5u0sb5 b:1087-1210 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5u0sc1 c:4-36,c:174-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5u0sc2 c:37-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5u0sd1 d:6-130 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5u0se1 e:4-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5u0se2 e:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5u0sf1 f:60-142 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5u0sg2 g:3-69 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5u0sg1 g:70-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5u0sG1 G:11-86 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e5u0sG2 G:219-315 Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region
e5u0sh1 h:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5u0sH1 H:3-200 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8
e5u0si2 i:3-50 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5u0si1 i:51-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5u0sj1 j:1-64 HTH RPB10 RPB10
e5u0sk1 k:1-119 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5u0sK1 K:15-112 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11
e5u0sl1 l:19-63 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5u0sR1 R:1-207 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e5u0sT1 T:2-187 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e5u0sU1 U:1-138 Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21)
e5u0sV1 V:5-122 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22