ECOD: domain e5vi8C6

Domain ID e5vi8C6

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A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: RNA_pol_Rpb2_6

UID:	002068277
Type:	Automatic domain
Parent:	e1twfB1
Range:	C:701-738,C:871-1026
Ligands:	SO4
PDB:	5vi8
PDB Description:	DNA-directed RNA polymerase subunit beta
UniProt:	P60281
Hsap BLAST neighbor:	Q9NW08
Species:

Domains in the same chain:

e5vi8C3	C:21-172,C:368-493	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vi8C5	C:173-367	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5vi8C2	C:494-629	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5vi8C7	C:630-700	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5vi8C6	C:701-738,C:871-1026	cradle loop barrel	RIFT-related	double psi
e5vi8C4	C:739-870	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5vi8C1	C:1027-1139	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e5vi8A1	A:1-47,A:170-221	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5vi8A2	A:48-169	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5vi8B1	B:1-47,B:170-233	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5vi8B2	B:48-169	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5vi8C3	C:21-172,C:368-493	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vi8C5	C:173-367	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5vi8C2	C:494-629	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5vi8C7	C:630-700	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5vi8C6	C:701-738,C:871-1026	cradle loop barrel	RIFT-related	double psi
e5vi8C4	C:739-870	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5vi8C1	C:1027-1139	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vi8E1	E:24-106	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e5vi8F2	F:140-156,F:163-301	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e5vi8F1	F:302-358	HTH	HTH	tri-helical
e5vi8F3	F:330-332,F:359-466	HTH	HTH	tri-helical
e5vi8J1	J:26-79	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5vi8T1	T:251-303	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like