Domain ID e5xogA7

Download files:
  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb1_2
UID: 002101943
Type: Automatic domain
Parent: e1twfA1
Range: A:338-375,A:437-520
Ligands: APC MG
PDB: 5xog
PDB Description: DNA-directed RNA polymerase subunit
UniProt: C4R4Y0
Hsap BLAST neighbor: P24928
Species:

Structure of domain e5xogA7

Domains in the same chain:

Download Pymol

e5xogA5 A:2-337 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5xogA7 A:338-375,A:437-520 cradle loop barrel RIFT-related double psi
e5xogA3 A:376-436 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5xogA9 A:521-663 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5xogA8 A:664-872 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5xogA1 A:873-1061 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5xogA2 A:1062-1104,A:1304-1463 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5xogA4 A:1105-1133,A:1245-1303 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5xogA6 A:1134-1244 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e5xogA5 A:2-337 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5xogA7 A:338-375,A:437-520 cradle loop barrel RIFT-related double psi
e5xogA3 A:376-436 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5xogA9 A:521-663 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5xogA8 A:664-872 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5xogA1 A:873-1061 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5xogA2 A:1062-1104,A:1304-1463 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5xogA4 A:1105-1133,A:1245-1303 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5xogA6 A:1134-1244 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5xogB1 B:9-57,B:77-121,B:155-209,B:398-534 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5xogB6 B:210-397 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5xogB3 B:535-623 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5xogB5 B:624-655,B:675-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5xogB4 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5xogB2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5xogB7 B:1098-1222 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5xogC2 C:4-40,C:173-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5xogC1 C:41-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5xogD1 D:3-185 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5xogE2 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5xogE1 E:143-214 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5xogF1 F:71-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5xogG2 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5xogG1 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5xogH1 H:3-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5xogI1 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xogI2 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xogJ1 J:1-66 HTH RPB10 RPB10
e5xogK1 K:1-113 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5xogL1 L:28-72 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xogM1 M:15-78 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xogW1 W:749-809 SH3 SH3 SH3