Domain ID e5xonI1

Download files:
  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: RNA_POL_M_15KD
UID: 002101997
Type: Automatic domain
Parent: e1twfI1
Range: I:3-49
Ligands: ZN
PDB: 5xon
PDB Description: DNA-directed RNA polymerase subunit
UniProt: C4QY79
Hsap BLAST neighbor: P36954
Species:

Structure of domain e5xonI1

Domains in the same chain:

Download Pymol

e5xonI1 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xonI2 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e5xonA9 A:2-337 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e5xonA6 A:338-375,A:437-520 cradle loop barrel RIFT-related double psi
e5xonA7 A:376-436 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5xonA8 A:521-663 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e5xonA2 A:664-872 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e5xonA5 A:873-1061 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e5xonA4 A:1062-1104,A:1304-1463 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e5xonA3 A:1105-1133,A:1245-1303 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5xonA1 A:1134-1244 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5xonB7 B:9-57,B:77-121,B:155-209,B:398-534 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5xonB5 B:210-397 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e5xonB3 B:535-623 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e5xonB6 B:624-655,B:675-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e5xonB4 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e5xonB1 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e5xonB2 B:1098-1222 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5xonC1 C:4-40,C:173-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5xonC2 C:41-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e5xonD1 D:3-185 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e5xonE1 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e5xonE2 E:143-214 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e5xonF1 F:71-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e5xonG2 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e5xonG1 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5xonH1 H:3-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5xonI1 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xonI2 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xonJ1 J:1-66 HTH RPB10 RPB10
e5xonK1 K:1-113 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e5xonL1 L:28-72 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xonU1 U:123-234 RuvA-C Elongation factor TFIIS domain 2/ Kix domain of creb binding protein Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e5xonU2 U:235-285 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xonV1 V:9-110 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5xonW2 W:213-313 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e5xonW1 W:316-450 SH3 SH3 SH3
e5xonW4 W:657-705 SH3 SH3 SH3
e5xonW3 W:747-809 SH3 SH3 SH3