Domain ID e5z56p2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: RNA-binding domain, RBD
  • T: RNA-binding domain, RBD
  • F: RRM_1
UID: 002392464
Type: Automatic domain
Parent: e1nu4A1
Range: p:7-84
PDB: 5z56
PDB Description: U2 small nuclear ribonucleoprotein B''
UniProt: P08579
Hsap BLAST neighbor: P08579
Species: Homo sapiens

Structure of domain e5z56p2

Domains in the same chain:

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e5z56p2 p:7-84 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z56p1 p:85-96,p:145-224 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD

Domains in the same PDB:

e5z5611 1:394-1304 Repetitive alpha hairpins ARM repeat ARM repeat
e5z5632 3:1-403 beta-propeller-like beta-propeller 7-bladed
e5z5634 3:404-441,3:773-1132 beta-propeller-like beta-propeller 7-bladed
e5z5633 3:442-772 beta-propeller-like beta-propeller 7-bladed
e5z5631 3:1133-1217 HTH HTH tri-helical
e5z5641 4:12-89 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z5651 5:12-119 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z5661 6:7-91 Glucocorticoid receptor-like LIM domain-like PHD finger-like domain-containing protein 5A
e5z5671 7:15-80 RDS3 complex subunit 10 RDS3 complex subunit 10 RDS3 complex subunit 10
e5z56a1 a:3-85 SH3 SH3 SH3
e5z56A3 A:25-810 Pre-mRNA-splicing factor 8 N-terminal domain Pre-mRNA-splicing factor 8 N-terminal domain Pre-mRNA-splicing factor 8 N-terminal domain
e5z56A4 A:811-1182 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e5z56A1 A:1183-1502 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e5z56A5 A:1503-1505,A:1527-1754 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e5z56A2 A:1755-2015 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5z56A6 A:2067-2314 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like
e5z56b1 b:8-89 SH3 SH3 SH3
e5z56c1 c:1-82 SH3 SH3 SH3
e5z56d1 d:20-116 SH3 SH3 SH3
e5z56D8 D:404-682 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56D2 D:683-887 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56D5 D:888-993 HTH HTH winged
e5z56D9 D:994-1125 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e5z56D3 D:1126-1180 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e5z56D12 D:1181-1311 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e5z56D7 D:1312-1520 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56D1 D:1521-1722 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56D10 D:1723-1824 HTH HTH winged
e5z56D6 D:1825-1957 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e5z56D11 D:1958-2015 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e5z56D4 D:2016-2125 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e5z56e1 e:14-92 SH3 SH3 SH3
e5z56E1 E:58-356 beta-propeller-like beta-propeller 7-bladed
e5z56f1 f:2-75 SH3 SH3 SH3
e5z56g1 g:3-76 SH3 SH3 SH3
e5z56h1 h:4-85 SH3 SH3 SH3
e5z56i1 i:4-89 SH3 SH3 SH3
e5z56I1 I:156-819 Repetitive alpha hairpins ARM repeat ARM repeat
e5z56j1 j:1-82 SH3 SH3 SH3
e5z56J1 J:216-802 Repetitive alpha hairpins ARM repeat ARM repeat
e5z56k1 k:20-116 SH3 SH3 SH3
e5z56l1 l:14-92 SH3 SH3 SH3
e5z56m1 m:2-75 SH3 SH3 SH3
e5z56M1 M:191-226 CCCH zinc finger CCCH zinc finger CCCH zinc finger
e5z56n1 n:4-76 SH3 SH3 SH3
e5z56N1 N:1-143 Pre-mRNA-splicing factor BUD31 Pre-mRNA-splicing factor BUD31 Pre-mRNA-splicing factor BUD31
e5z56o1 o:2-163 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e5z56O3 O:19-89 RING/U-box-like RING/U-box-like FYVE/PHD zinc finger
e5z56O1 O:90-221 CCCH zinc finger CCCH zinc finger CCCH zinc finger
e5z56O2 O:222-303 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z56p2 p:7-84 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z56p1 p:85-96,p:145-224 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z56Q4 Q:21-415 Repetitive alpha hairpins ARM repeat ARM repeat
e5z56Q5 Q:416-492,Q:660-706,Q:795-1134 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56Q1 Q:493-659 cradle loop barrel RIFT-related Alanine racemase-C
e5z56Q3 Q:707-753,Q:774-794 Spliceosomal helicase Aquarius insert domain Spliceosomal helicase Aquarius insert domain Spliceosomal helicase Aquarius insert domain
e5z56Q2 Q:1135-1381 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56S1 S:8-166 Cyclophilin-like Cyclophilin-like Cyclophilin-like
e5z56T1 T:184-496 beta-propeller-like beta-propeller 7-bladed
e5z56u1 u:160-285 Surp module (SWAP domain) Surp module (SWAP domain) Surp module (SWAP domain)
e5z56v1 v:18-35,v:40-86 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e5z56v2 v:87-91,v:114-223 HSP20-like Pre-mRNA-splicing factor PRP11 C-terminal domain Pre-mRNA-splicing factor PRP11 C-terminal domain
e5z56V1 V:149-406 Repetitive alpha hairpins ARM repeat ARM repeat
e5z56V2 V:448-648 Repetitive alpha hairpins ARM repeat ARM repeat
e5z56w1 w:2-353 Pre-mRNA-splicing factor PRP9 Pre-mRNA-splicing factor PRP9 Pre-mRNA-splicing factor PRP9
e5z56x2 x:386-574 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56x1 x:575-750 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5z56x4 x:751-931 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e5z56x3 x:932-1017 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5z56X1 X:246-367 SMAD/FHA domain SMAD/FHA domain SMAD/FHA domain
e5z56y1 y:5-83 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z56y2 y:138-299 Cyclophilin-like Cyclophilin-like Cyclophilin-like
e5z56Y1 Y:8-112 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5z56z1 z:2-178 Cyclophilin-like Cyclophilin-like Cyclophilin-like