ECOD: domain e6a5vA5

Domain ID e6a5vA5

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: RNA_pol_Rpb1_2

UID:	002394986
Type:	Automatic domain
Parent:	e1twfA1
Range:	A:338-375,A:437-520
Ligands:	MG
PDB:	6a5v
PDB Description:
Hsap BLAST neighbor:	P24928
Species:

Domains in the same chain:

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e6a5vA1	A:2-337	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6a5vA5	A:338-375,A:437-520	cradle loop barrel	RIFT-related	double psi
e6a5vA8	A:376-436	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6a5vA2	A:521-663	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6a5vA3	A:664-872	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6a5vA4	A:873-1061	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6a5vA7	A:1062-1104,A:1304-1457	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6a5vA9	A:1105-1133,A:1245-1303	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5vA6	A:1134-1244	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e6a5va1	a:38-134	Histone-like	Histone-related	Histone
e6a5vA1	A:2-337	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6a5vA5	A:338-375,A:437-520	cradle loop barrel	RIFT-related	double psi
e6a5vA8	A:376-436	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6a5vA2	A:521-663	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6a5vA3	A:664-872	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6a5vA4	A:873-1061	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6a5vA7	A:1062-1104,A:1304-1457	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6a5vA9	A:1105-1133,A:1245-1303	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5vA6	A:1134-1244	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5vb1	b:23-102	Histone-like	Histone-related	Histone
e6a5vB5	B:9-57,B:77-121,B:155-209,B:398-534	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6a5vB1	B:210-397	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6a5vB3	B:535-623	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6a5vB2	B:624-655,B:675-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6a5vB4	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e6a5vB7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6a5vB6	B:1098-1222	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6a5vc1	c:16-118	Histone-like	Histone-related	Histone
e6a5vC2	C:4-40,C:173-266	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6a5vC1	C:41-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6a5vd1	d:28-122	Histone-like	Histone-related	Histone
e6a5vD1	D:3-185	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6a5ve1	e:39-135	Histone-like	Histone-related	Histone
e6a5vE1	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6a5vE2	E:143-214	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6a5vf1	f:25-102	Histone-like	Histone-related	Histone
e6a5vF1	F:71-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6a5vg1	g:14-118	Histone-like	Histone-related	Histone
e6a5vG1	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6a5vG2	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6a5vh1	h:31-121	Histone-like	Histone-related	Histone
e6a5vH1	H:3-145	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6a5vI1	I:3-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6a5vI2	I:50-113	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6a5vJ1	J:1-66	HTH	RPB10	RPB10
e6a5vK1	K:1-113	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6a5vL1	L:28-72	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related