ECOD: domain e6ahdp1

Domain ID e6ahdp1

A: a+b two layers
X: Alpha-beta plaits
H: RNA-binding domain, RBD
T: RNA-binding domain, RBD
F: RRM_1

UID:	002411565
Type:	Automatic domain
Parent:	e1nu4A1
Range:	p:3-96
PDB:	6ahd
PDB Description:	U2 small nuclear ribonucleoprotein B''
UniProt:	P08579
Hsap BLAST neighbor:	P08579
Species:	Homo sapiens

Domains in the same chain:

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e6ahdp1	p:3-96	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Domains in the same PDB:

e6ahd32	3:1-403	beta-propeller-like	beta-propeller	7-bladed
e6ahd34	3:404-441,3:773-1132	beta-propeller-like	beta-propeller	7-bladed
e6ahd33	3:442-772	beta-propeller-like	beta-propeller	7-bladed
e6ahd31	3:1133-1217	HTH	HTH	tri-helical
e6ahd41	4:12-89	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e6ahd51	5:12-119	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e6ahd61	6:7-95	Glucocorticoid receptor-like	LIM domain-like	PHD finger-like domain-containing protein 5A
e6ahd71	7:15-80	RDS3 complex subunit 10	RDS3 complex subunit 10	RDS3 complex subunit 10
e6ahd81	8:79-134	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers
e6ahda1	a:4-89	SH3	SH3	SH3
e6ahdA3	A:56-810	Pre-mRNA-splicing factor 8 N-terminal domain	Pre-mRNA-splicing factor 8 N-terminal domain	Pre-mRNA-splicing factor 8 N-terminal domain
e6ahdA5	A:811-1182	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e6ahdA6	A:1183-1502	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e6ahdA4	A:1503-1754	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease-like
e6ahdA1	A:1755-2026	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e6ahdA2	A:2067-2316	Cytidine deaminase-like	Cytidine deaminase-like	Cytidine deaminase-like
e6ahdA01	A0:1-73	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e6ahdb1	b:1-82	SH3	SH3	SH3
e6ahdc1	c:20-116	SH3	SH3	SH3
e6ahdC3	C:112-439	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6ahdC2	C:440-580	cradle loop barrel	RIFT-related	Alanine racemase-C
e6ahdC4	C:581-659	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e6ahdC5	C:660-828	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e6ahdC1	C:829-943	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e6ahdd1	d:2-75	SH3	SH3	SH3
e6ahdD8	D:427-682	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6ahdD2	D:683-887	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6ahdD5	D:888-993	HTH	HTH	winged
e6ahdD10	D:994-1125	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like
e6ahdD6	D:1126-1180	HhH/H2TH	SAM-like subdomain in Sec63-like proteins	SAM-like subdomain in Sec63-like proteins
e6ahdD3	D:1181-1311	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e6ahdD11	D:1312-1520	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6ahdD4	D:1521-1722	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6ahdD7	D:1723-1824	HTH	HTH	winged
e6ahdD12	D:1825-1957	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like
e6ahdD1	D:1958-2015	HhH/H2TH	SAM-like subdomain in Sec63-like proteins	SAM-like subdomain in Sec63-like proteins
e6ahdD9	D:2016-2125	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e6ahde1	e:14-92	SH3	SH3	SH3
e6ahdE1	E:58-356	beta-propeller-like	beta-propeller	7-bladed
e6ahdf1	f:3-76	SH3	SH3	SH3
e6ahdg1	g:3-85	SH3	SH3	SH3
e6ahdh1	h:4-85	SH3	SH3	SH3
e6ahdi1	i:4-89	SH3	SH3	SH3
e6ahdj1	j:1-82	SH3	SH3	SH3
e6ahdJ2	J:436-541	U4/U6 small nuclear ribonucleoprotein PRP3 N-terminal region	U4/U6 small nuclear ribonucleoprotein PRP3 N-terminal region	U4/U6 small nuclear ribonucleoprotein PRP3 N-terminal region
e6ahdJ1	J:542-672	Alpha-beta plaits	Acylphosphatase-like	Acylphosphatase-like
e6ahdk1	k:20-116	SH3	SH3	SH3
e6ahdl1	l:2-75	SH3	SH3	SH3
e6ahdL1	L:52-80,L:85-216	Nop N-terminal domain	Nop N-terminal domain	Nop N-terminal domain
e6ahdL2	L:217-334	HhH/H2TH	SAM/DNA-glycosylase	Nop C-terminal domain
e6ahdL3	L:335-432	Pre-mRNA-processing factor 31 C-terminal region	Pre-mRNA-processing factor 31 C-terminal region	Pre-mRNA-processing factor 31 C-terminal region
e6ahdm1	m:14-92	SH3	SH3	SH3
e6ahdM1	M:5-128	Bacillus chorismate mutase-like	L30e-like	L30e-like
e6ahdn1	n:4-76	SH3	SH3	SH3
e6ahdo1	o:2-163	Single-stranded right-handed beta-helix	Leucine-rich repeats	Leucine-rich repeats
e6ahdO1	O:2-142	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e6ahdp1	p:3-96	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e6ahdP1	P:26-114	SH3	SH3	SH3
e6ahdq1	q:1-90	SH3	SH3	SH3
e6ahdQ1	Q:4-74	SH3	SH3	SH3
e6ahdr1	r:16-98	SH3	SH3	SH3
e6ahdR1	R:15-92	SH3	SH3	SH3
e6ahds1	s:1-80	SH3	SH3	SH3
e6ahdS1	S:4-76	SH3	SH3	SH3
e6ahdt1	t:10-85	SH3	SH3	SH3
e6ahdT1	T:4-74	SH3	SH3	SH3
e6ahdu1	u:160-302	Surp module (SWAP domain)	Surp module (SWAP domain)	Surp module (SWAP domain)
e6ahdU1	U:7-83	SH3	SH3	SH3
e6ahdv1	v:118-223	HSP20-like	Pre-mRNA-splicing factor PRP11 C-terminal domain	Pre-mRNA-splicing factor PRP11 C-terminal domain
e6ahdV1	V:2-83	SH3	SH3	SH3
e6ahdW1	W:9-177	Cyclophilin-like	Cyclophilin-like	Cyclophilin-like
e6ahdx1	x:7-76	SH3	SH3	SH3
e6ahdX1	X:8-82	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers
e6ahdy1	y:11-87	SH3	SH3	SH3
e6ahdY2	Y:5-132	Lis-homology dimerization domain	Lis-homology dimerization domain	Lis-homology dimerization domain
e6ahdY1	Y:133-154,Y:204-513	beta-propeller-like	beta-propeller	7-bladed
e6ahdz1	z:4-73	SH3	SH3	SH3
e6ahdZ1	Z:1-176	Repetitive alpha hairpins	Pre-mRNA-splicing factor 38A	Pre-mRNA-splicing factor 38A