Domain ID e6gylF1

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  • A: alpha arrays
  • X: RPB6/omega subunit-like
  • H: RPB6/omega subunit-like
  • T: RPB6
  • F: RNA_pol_Rpb6
UID: 002428015
Type: Automatic domain
Parent: e1qklA1
Range: F:72-154
PDB: 6gyl
PDB Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2
UniProt: P20435
Hsap BLAST neighbor: P61218
Species:

Structure of domain e6gylF1

Domains in the same chain:

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e6gylF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6

Domains in the same PDB:

e6gylA3 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6gylA2 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e6gylA5 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gylA7 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6gylA9 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6gylA1 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gylA8 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6gylA4 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gylA6 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gylB1 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gylB2 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6gylB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6gylB5 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6gylB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e6gylB4 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6gylB7 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gylC2 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gylC1 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6gylD1 D:24-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6gylE1 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6gylE2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6gylF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6gylG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6gylG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gylH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gylI1 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gylI2 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gylJ1 J:1-65 HTH RPB10 RPB10
e6gylK1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gylL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gylM1 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gylM2 M:67-218 HTH HTH Cyclin-like
e6gylM3 M:233-326 HTH HTH Cyclin-like
e6gylO2 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e6gylO1 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e6gylQ1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e6gylR1 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e6gylR2 R:291-351 HTH HTH winged
e6gylU1 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e6gylU2 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e6gylV1 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e6gylV2 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e6gylW2 W:4-99,W:170-194 HTH HTH winged
e6gylW1 W:100-169 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gylX1 X:123-188 HTH HTH winged
e6gylX3 X:189-249 HTH HTH winged
e6gylX2 X:250-283 HTH HTH winged