Domain ID e6ir9I1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: TFIIS_C
UID: 002448588
Type: Automatic domain
Parent: e1tfiA1
Range: I:50-113
Ligands: ZN
PDB: 6ir9
PDB Description: DNA-directed RNA polymerase subunit
UniProt: F2QPE6
Hsap BLAST neighbor: P36954
Species:

Structure of domain e6ir9I1

Domains in the same chain:

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e6ir9I2 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ir9I1 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e6ir9a1 a:38-134 Histone-like Histone-related Histone
e6ir9A8 A:2-337 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6ir9A4 A:338-375,A:437-520 cradle loop barrel RIFT-related double psi
e6ir9A2 A:376-436 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ir9A6 A:521-663 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6ir9A1 A:664-872 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6ir9A5 A:873-1061 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6ir9A9 A:1062-1104,A:1304-1463 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6ir9A3 A:1105-1133,A:1245-1303 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6ir9A7 A:1134-1244 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6ir9b1 b:23-102 Histone-like Histone-related Histone
e6ir9B7 B:9-57,B:77-121,B:155-209,B:398-534 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6ir9B1 B:210-397 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6ir9B5 B:535-623 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6ir9B3 B:624-655,B:675-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6ir9B6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e6ir9B2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ir9B4 B:1098-1222 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6ir9c1 c:16-118 Histone-like Histone-related Histone
e6ir9C2 C:4-40,C:173-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6ir9C1 C:41-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6ir9d1 d:28-122 Histone-like Histone-related Histone
e6ir9D1 D:3-185 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6ir9e1 e:39-135 Histone-like Histone-related Histone
e6ir9E1 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6ir9E2 E:143-214 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6ir9f1 f:25-102 Histone-like Histone-related Histone
e6ir9F1 F:71-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6ir9g1 g:14-118 Histone-like Histone-related Histone
e6ir9G1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6ir9G2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ir9h1 h:31-121 Histone-like Histone-related Histone
e6ir9H1 H:3-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ir9I2 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ir9I1 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ir9J1 J:1-66 HTH RPB10 RPB10
e6ir9K1 K:1-113 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6ir9L1 L:28-72 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ir9M1 M:15-78 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ir9V1 V:9-110 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ir9W2 W:213-313 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e6ir9W1 W:319-450 SH3 SH3 SH3
e6ir9W3 W:749-809 SH3 SH3 SH3