ECOD: domain e6j4yD1

Domain ID e6j4yD1

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: RNA_pol_Rpb4

UID:	002449913
Type:	Automatic domain
Parent:	e1go3F1
Range:	D:3-185
PDB:	6j4y
PDB Description:	RNA polymerase II subunit B32
UniProt:	C4R2U9
Hsap BLAST neighbor:	O15514
Species:

Domains in the same chain:

Download Pymol

e6j4yD1	D:3-185	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e6j4ya1	a:38-134	Histone-like	Histone-related	Histone
e6j4yA6	A:2-337	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6j4yA5	A:338-375,A:437-520	cradle loop barrel	RIFT-related	double psi
e6j4yA1	A:376-436	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6j4yA4	A:521-663	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6j4yA3	A:664-872	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6j4yA9	A:873-1061	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6j4yA7	A:1062-1104,A:1304-1463	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6j4yA8	A:1105-1133,A:1245-1303	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6j4yA2	A:1134-1244	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6j4yb1	b:23-102	Histone-like	Histone-related	Histone
e6j4yB6	B:9-57,B:77-121,B:155-209,B:398-534	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6j4yB1	B:210-397	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6j4yB5	B:535-623	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6j4yB4	B:624-655,B:675-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6j4yB3	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e6j4yB7	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6j4yB2	B:1098-1222	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6j4yc1	c:16-118	Histone-like	Histone-related	Histone
e6j4yC1	C:4-40,C:173-266	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6j4yC2	C:41-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6j4yd1	d:28-122	Histone-like	Histone-related	Histone
e6j4yD1	D:3-185	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6j4ye1	e:39-135	Histone-like	Histone-related	Histone
e6j4yE2	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6j4yE1	E:143-214	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6j4yf1	f:25-102	Histone-like	Histone-related	Histone
e6j4yF1	F:71-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6j4yg1	g:14-118	Histone-like	Histone-related	Histone
e6j4yG2	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6j4yG1	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6j4yh1	h:31-121	Histone-like	Histone-related	Histone
e6j4yH1	H:3-145	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6j4yI2	I:3-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6j4yI1	I:50-113	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6j4yJ1	J:1-66	HTH	RPB10	RPB10
e6j4yK1	K:1-113	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6j4yL1	L:28-72	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6j4yM1	M:15-78	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6j4yV1	V:9-110	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6j4yW2	W:213-313	Alpha-beta plaits	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain
e6j4yW1	W:316-450	SH3	SH3	SH3
e6j4yW3	W:749-809	SH3	SH3	SH3